| RVdb StrainID | ANS00013 | GenBank Accession | ON729336.1 |
| Species | RVA | Sequence Length | 7011 nt |
| Serotype | 53 Checked by RVdb | Serotype (GenBank) | 53 |
| Definition | Rhinovirus A53 strain SC0711 polyprotein gene, partial cds | GenBank Submission Date | 2022-07-20 |
| Strain Name | SC0711 | Sampling Date | 2019 |
| Sampling Country | USA | Sampling location | Seattle, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 185913 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA023529 | 1A (VP4) | 541 | 747 | 0 | 0 | 207 | |
| SQA023530 | 1B (VP2) | 748 | 1536 | 0 | 0 | 789 | |
| SQA023531 | 1C (VP3) | 1537 | 2250 | 0 | 0 | 714 | |
| SQA023532 | 1D (VP1) | 2251 | 3126 | 0 | 0 | 876 | |
| SQA023533 | 2A (P2-A) | 3127 | 3555 | 0 | 0 | 429 | |
| SQA023534 | 2B (P2-B) | 3556 | 3840 | 0 | 0 | 285 | |
| SQA023535 | 2C (P2-C) | 3841 | 4803 | 0 | 0 | 963 | |
| SQA023536 | 3A (P3-A) | 4804 | 5037 | 0 | 0 | 234 | |
| SQA023537 | 3B (VPg) | 5038 | 5100 | 0 | 0 | 63 | |
| SQA023538 | protease 3C | 5101 | 5649 | 0 | 0 | 549 | |
| SQA023539 | 3D | 5650 | 7011 | 0 | 1 | 1362 | |
| SQA023540 | 5'UTR | 1 | 540 | 1 | 0 | 540 | |
| SQA023541 | CDS | 541 | 7011 | 0 | 1 | 6471 | |
| SQA023542 | VP4/2 | 541 | 975 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA030460 | protease 3C | 1521 | 1703 | 0 | 0 | 183 | |
| SPA030461 | 3D | 1704 | 2157 | 0 | 1 | 454 | |
| SPA030462 | 3B (VPg) | 1500 | 1520 | 0 | 0 | 21 | |
| SPA030463 | 3A (P3-A) | 1422 | 1499 | 0 | 0 | 78 | |
| SPA030464 | 2C (P2-C) | 1101 | 1421 | 0 | 0 | 321 | |
| SPA030465 | 2B (P2-B) | 1006 | 1100 | 0 | 0 | 95 | |
| SPA030466 | 2A (P2-A) | 863 | 1005 | 0 | 0 | 143 | |
| SPA030467 | 1D (VP1) | 571 | 862 | 0 | 0 | 292 | |
| SPA030468 | 1C (VP3) | 333 | 570 | 0 | 0 | 238 | |
| SPA030469 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPA030470 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA030471 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA030472 | CDS | 1 | 2157 | 0 | 0 | 2157 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |