RVdb StrainID | ANP08317 | GenBank Accession | EF173417.1 |
Species | RVA | Sequence Length | 7129 nt |
Serotype | 64 Checked by RVdb | Serotype (GenBank) | 64 |
Definition | Human rhinovirus 64, complete genome | GenBank Submission Date | 2007-07-15 |
Strain Name | -N/A- | Sampling Date | -N/A- |
Sampling Country | -N/A- | Sampling location | -N/A- |
Isolation Source | -N/A- | NCBI Taxon ID | 185922 |
Sequencing Technology | -N/A- | Assembly Method | -N/A- |
SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
---|---|---|---|---|---|---|---|
SQA022904 | 1A (VP4) | 615 | 821 | 0 | 0 | 207 | |
SQA022905 | 1B (VP2) | 822 | 1604 | 0 | 0 | 783 | |
SQA022906 | 1C (VP3) | 1605 | 2315 | 0 | 0 | 711 | |
SQA022907 | 1D (VP1) | 2316 | 3182 | 0 | 0 | 867 | |
SQA022908 | 2A (P2-A) | 3183 | 3608 | 0 | 0 | 426 | |
SQA022909 | 2B (P2-B) | 3609 | 3893 | 0 | 0 | 285 | |
SQA022910 | 2C (P2-C) | 3894 | 4859 | 0 | 0 | 966 | |
SQA022911 | 3'UTR | 7086 | 7129 | 0 | 0 | 44 | |
SQA022912 | 3A (P3-A) | 4860 | 5090 | 0 | 0 | 231 | |
SQA022913 | 3B (VPg) | 5091 | 5153 | 0 | 0 | 63 | |
SQA022914 | protease 3C | 5154 | 5702 | 0 | 0 | 549 | |
SQA022915 | 3D | 5703 | 7082 | 0 | 0 | 1380 | |
SQA022916 | 5'UTR | 1 | 614 | 0 | 0 | 614 | |
SQA022917 | CDS | 615 | 7085 | 0 | 0 | 6471 | |
SQA022918 | VP4/2 | 615 | 1049 | 0 | 0 | 435 | |
SQA022919 | genome | 1 | 7129 | 0 | 0 | 7129 |
SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
---|---|---|---|---|---|---|---|
SPA000879 | protease 3C | 1514 | 1696 | 0 | 0 | 183 | |
SPA000880 | 3D | 1697 | 2156 | 0 | 0 | 460 | |
SPA000881 | 3B (VPg) | 1493 | 1513 | 0 | 0 | 21 | |
SPA000882 | 3A (P3-A) | 1416 | 1492 | 0 | 0 | 77 | |
SPA000883 | 2C (P2-C) | 1094 | 1415 | 0 | 0 | 322 | |
SPA000884 | 2B (P2-B) | 999 | 1093 | 0 | 0 | 95 | |
SPA000885 | 2A (P2-A) | 857 | 998 | 0 | 0 | 142 | |
SPA000886 | 1D (VP1) | 568 | 856 | 0 | 0 | 289 | |
SPA000887 | 1C (VP3) | 331 | 567 | 0 | 0 | 237 | |
SPA000888 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
SPA000889 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
SPA000890 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
SPA000891 | CDS | 1 | 2156 | 0 | 0 | 2156 |
PMID | Title | Publication Year | Journal | View in RVdb |
---|---|---|---|---|
17623054 | New complete genome sequences of human rhinoviruses shed light on their phylogeny and genomic features. | 2007 | BMC Genomics | View More |