| RVdb StrainID | ANP06547 | GenBank Accession | KC881035.1 |
| Species | RVA | Sequence Length | 7117 nt |
| Serotype | 1 Corrected by RVdb | Serotype (GenBank) | 1B |
| Definition | Human rhinovirus 1B strain HRV-1B_P27 polyprotein gene, complete cds | GenBank Submission Date | 2015-05-06 |
| Strain Name | HRV-1B_P27 | Sampling Date | 2011 |
| Sampling Country | USA | Sampling location | -N/A- |
| Isolation Source | -N/A- | NCBI Taxon ID | 2777147 |
| Sequencing Technology | Sanger dideoxy sequencing | Assembly Method | CLC DNA Workbench v. 6 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA021643 | 1A (VP4) | 610 | 816 | 0 | 0 | 207 | |
| SQA021644 | 1B (VP2) | 817 | 1605 | 0 | 0 | 789 | |
| SQA021645 | 1C (VP3) | 1606 | 2319 | 0 | 0 | 714 | |
| SQA021646 | 1D (VP1) | 2320 | 3180 | 0 | 0 | 861 | |
| SQA021647 | 2A (P2-A) | 3181 | 3606 | 0 | 0 | 426 | |
| SQA021648 | 2B (P2-B) | 3607 | 3891 | 0 | 0 | 285 | |
| SQA021649 | 2C (P2-C) | 3892 | 4857 | 0 | 0 | 966 | |
| SQA021650 | 3'UTR | 7084 | 7117 | 0 | 1 | 34 | |
| SQA021651 | 3A (P3-A) | 4858 | 5088 | 0 | 0 | 231 | |
| SQA021652 | 3B (VPg) | 5089 | 5151 | 0 | 0 | 63 | |
| SQA021653 | protease 3C | 5152 | 5700 | 0 | 0 | 549 | |
| SQA021654 | 3D | 5701 | 7080 | 0 | 0 | 1380 | |
| SQA021655 | 5'UTR | 1 | 609 | 1 | 0 | 609 | |
| SQA021656 | CDS | 610 | 7083 | 0 | 0 | 6474 | |
| SQA021657 | VP4/2 | 610 | 1044 | 0 | 0 | 435 | |
| SQA021658 | genome | 1 | 7117 | 1 | 1 | 7117 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA007635 | protease 3C | 1515 | 1697 | 0 | 0 | 183 | |
| SPA007636 | 3D | 1698 | 2157 | 0 | 0 | 460 | |
| SPA007637 | 3B (VPg) | 1494 | 1514 | 0 | 0 | 21 | |
| SPA007638 | 3A (P3-A) | 1417 | 1493 | 0 | 0 | 77 | |
| SPA007639 | 2C (P2-C) | 1095 | 1416 | 0 | 0 | 322 | |
| SPA007640 | 2B (P2-B) | 1000 | 1094 | 0 | 0 | 95 | |
| SPA007641 | 2A (P2-A) | 858 | 999 | 0 | 0 | 142 | |
| SPA007642 | 1D (VP1) | 571 | 857 | 0 | 0 | 287 | |
| SPA007643 | 1C (VP3) | 333 | 570 | 0 | 0 | 238 | |
| SPA007644 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPA007645 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA007646 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA007647 | CDS | 1 | 2157 | 0 | 0 | 2157 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 25561542 | Temperature-dependent innate defense against the common cold virus limits viral replication at warm temperature in mouse airway cells. | 2015 | Proc Natl Acad Sci U S A | View More |