| RVdb StrainID | ANP00187 | GenBank Accession | OM001351.1 |
| Species | RVA | Sequence Length | 7054 nt |
| Serotype | 49 Checked by RVdb | Serotype (GenBank) | 49 |
| Definition | Rhinovirus A49 strain RvA49/USA/2021/LVAT6B, complete genome | GenBank Submission Date | 2022-01-13 |
| Strain Name | RvA49/USA/2021/LVAT6B | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | Seattle, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 44131 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA016281 | 1A (VP4) | 560 | 766 | 0 | 0 | 207 | |
| SQA016282 | 1B (VP2) | 767 | 1537 | 0 | 0 | 771 | |
| SQA016283 | 1C (VP3) | 1538 | 2260 | 0 | 0 | 723 | |
| SQA016284 | 1D (VP1) | 2261 | 3109 | 0 | 0 | 849 | |
| SQA016285 | 2A (P2-A) | 3110 | 3535 | 0 | 0 | 426 | |
| SQA016286 | 2B (P2-B) | 3536 | 3820 | 0 | 0 | 285 | |
| SQA016287 | 2C (P2-C) | 3821 | 4786 | 0 | 0 | 966 | |
| SQA016288 | 3'UTR | 7013 | 7053 | 0 | 0 | 41 | |
| SQA016289 | 3A (P3-A) | 4787 | 5017 | 0 | 0 | 231 | |
| SQA016290 | 3B (VPg) | 5018 | 5080 | 0 | 0 | 63 | |
| SQA016291 | protease 3C | 5081 | 5629 | 0 | 0 | 549 | |
| SQA016292 | 3D | 5630 | 7009 | 0 | 0 | 1380 | |
| SQA016293 | 5'UTR | 1 | 559 | 1 | 0 | 559 | |
| SQA016294 | CDS | 560 | 7012 | 0 | 0 | 6453 | |
| SQA016295 | VP4/2 | 560 | 994 | 0 | 0 | 435 | |
| SQA016296 | genome | 1 | 7054 | 1 | 0 | 7054 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA026314 | protease 3C | 1508 | 1690 | 0 | 0 | 183 | |
| SPA026315 | 3D | 1691 | 2146 | 0 | 0 | 456 | |
| SPA026316 | 3B (VPg) | 1487 | 1507 | 0 | 0 | 21 | |
| SPA026317 | 3A (P3-A) | 1410 | 1486 | 0 | 0 | 77 | |
| SPA026318 | 2C (P2-C) | 1088 | 1409 | 0 | 0 | 322 | |
| SPA026319 | 2B (P2-B) | 993 | 1087 | 0 | 0 | 95 | |
| SPA026320 | 2A (P2-A) | 851 | 992 | 0 | 0 | 142 | |
| SPA026321 | 1D (VP1) | 568 | 850 | 0 | 0 | 283 | |
| SPA026322 | 1C (VP3) | 331 | 567 | 0 | 0 | 237 | |
| SPA026323 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPA026324 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA026325 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA026326 | CDS | 1 | 2150 | 0 | 0 | 2150 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |