| RVdb StrainID | ANP00147 | GenBank Accession | OM001397.1 |
| Species | RVA | Sequence Length | 7106 nt |
| Serotype | 12 Checked by RVdb | Serotype (GenBank) | 12 |
| Definition | Rhinovirus A12 strain RvA12/USA/2021/2PYKSY, complete genome | GenBank Submission Date | 2022-01-13 |
| Strain Name | RvA12/USA/2021/2PYKSY | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | Seattle, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 147684 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA016154 | 1A (VP4) | 593 | 799 | 0 | 0 | 207 | |
| SQA016155 | 1B (VP2) | 800 | 1588 | 0 | 0 | 789 | |
| SQA016156 | 1C (VP3) | 1589 | 2302 | 0 | 0 | 714 | |
| SQA016157 | 1D (VP1) | 2303 | 3163 | 0 | 0 | 861 | |
| SQA016158 | 2A (P2-A) | 3164 | 3592 | 0 | 0 | 429 | |
| SQA016159 | 2B (P2-B) | 3593 | 3877 | 0 | 0 | 285 | |
| SQA016160 | 2C (P2-C) | 3878 | 4840 | 0 | 0 | 963 | |
| SQA016161 | 3'UTR | 7064 | 7106 | 0 | 0 | 43 | |
| SQA016162 | 3A (P3-A) | 4841 | 5071 | 0 | 0 | 231 | |
| SQA016163 | 3B (VPg) | 5072 | 5134 | 0 | 0 | 63 | |
| SQA016164 | protease 3C | 5135 | 5683 | 0 | 0 | 549 | |
| SQA016165 | 3D | 5684 | 7060 | 0 | 0 | 1377 | |
| SQA016166 | 5'UTR | 1 | 592 | 1 | 0 | 592 | |
| SQA016167 | CDS | 593 | 7063 | 0 | 0 | 6471 | |
| SQA016168 | VP4/2 | 593 | 1027 | 0 | 0 | 435 | |
| SQA016169 | genome | 1 | 7106 | 1 | 0 | 7106 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA026834 | protease 3C | 1515 | 1697 | 0 | 0 | 183 | |
| SPA026835 | 3D | 1698 | 2156 | 0 | 0 | 459 | |
| SPA026836 | 3B (VPg) | 1494 | 1514 | 0 | 0 | 21 | |
| SPA026837 | 3A (P3-A) | 1417 | 1493 | 0 | 0 | 77 | |
| SPA026838 | 2C (P2-C) | 1096 | 1416 | 0 | 0 | 321 | |
| SPA026839 | 2B (P2-B) | 1001 | 1095 | 0 | 0 | 95 | |
| SPA026840 | 2A (P2-A) | 858 | 1000 | 0 | 0 | 143 | |
| SPA026841 | 1D (VP1) | 571 | 857 | 0 | 0 | 287 | |
| SPA026842 | 1C (VP3) | 333 | 570 | 0 | 0 | 238 | |
| SPA026843 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPA026844 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA026845 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA026846 | CDS | 1 | 2156 | 0 | 0 | 2156 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |