| RVdb StrainID | ANP00117 | GenBank Accession | OM001439.1 |
| Species | RVA | Sequence Length | 7094 nt |
| Serotype | 78 Checked by RVdb | Serotype (GenBank) | 78 |
| Definition | Rhinovirus A78 strain RvA78/USA/2021/MPLXS4, complete genome | GenBank Submission Date | 2022-01-13 |
| Strain Name | RvA78/USA/2021/MPLXS4 | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | Seattle, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 147685 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA016058 | 1A (VP4) | 578 | 784 | 0 | 0 | 207 | |
| SQA016059 | 1B (VP2) | 785 | 1576 | 0 | 0 | 792 | |
| SQA016060 | 1C (VP3) | 1577 | 2290 | 0 | 0 | 714 | |
| SQA016061 | 1D (VP1) | 2291 | 3151 | 0 | 0 | 861 | |
| SQA016062 | 2A (P2-A) | 3152 | 3580 | 0 | 0 | 429 | |
| SQA016063 | 2B (P2-B) | 3581 | 3865 | 0 | 0 | 285 | |
| SQA016064 | 2C (P2-C) | 3866 | 4831 | 0 | 0 | 966 | |
| SQA016065 | 3'UTR | 7058 | 7094 | 0 | 0 | 37 | |
| SQA016066 | 3A (P3-A) | 4832 | 5062 | 0 | 0 | 231 | |
| SQA016067 | 3B (VPg) | 5063 | 5125 | 0 | 0 | 63 | |
| SQA016068 | protease 3C | 5126 | 5674 | 0 | 0 | 549 | |
| SQA016069 | 3D | 5675 | 7054 | 0 | 0 | 1380 | |
| SQA016070 | 5'UTR | 1 | 577 | 1 | 0 | 577 | |
| SQA016071 | CDS | 578 | 7057 | 0 | 0 | 6480 | |
| SQA016072 | VP4/2 | 578 | 1012 | 0 | 0 | 435 | |
| SQA016073 | genome | 1 | 7094 | 1 | 0 | 7094 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA027224 | protease 3C | 1517 | 1699 | 0 | 0 | 183 | |
| SPA027225 | 3D | 1700 | 2159 | 0 | 0 | 460 | |
| SPA027226 | 3B (VPg) | 1496 | 1516 | 0 | 0 | 21 | |
| SPA027227 | 3A (P3-A) | 1419 | 1495 | 0 | 0 | 77 | |
| SPA027228 | 2C (P2-C) | 1097 | 1418 | 0 | 0 | 322 | |
| SPA027229 | 2B (P2-B) | 1002 | 1096 | 0 | 0 | 95 | |
| SPA027230 | 2A (P2-A) | 859 | 1001 | 0 | 0 | 143 | |
| SPA027231 | 1D (VP1) | 572 | 858 | 0 | 0 | 287 | |
| SPA027232 | 1C (VP3) | 334 | 571 | 0 | 0 | 238 | |
| SPA027233 | 1B (VP2) | 70 | 333 | 0 | 0 | 264 | |
| SPA027234 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA027235 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA027236 | CDS | 1 | 2159 | 0 | 0 | 2159 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |