| RVdb StrainID | ANP00077 | GenBank Accession | ON311218.1 |
| Species | RVA | Sequence Length | 7047 nt |
| Serotype | 39 Checked by RVdb | Serotype (GenBank) | 39 |
| Definition | Rhinovirus A39 strain A39_1 polyprotein gene, complete cds | GenBank Submission Date | 2022-07-19 |
| Strain Name | A39_1 | Sampling Date | 2021-04-28 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 185907 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA015932 | 1A (VP4) | 519 | 725 | 0 | 0 | 207 | |
| SQA015933 | 1B (VP2) | 726 | 1520 | 0 | 0 | 795 | |
| SQA015934 | 1C (VP3) | 1521 | 2234 | 0 | 0 | 714 | |
| SQA015935 | 1D (VP1) | 2235 | 3089 | 0 | 0 | 855 | |
| SQA015936 | 2A (P2-A) | 3090 | 3515 | 0 | 0 | 426 | |
| SQA015937 | 2B (P2-B) | 3516 | 3800 | 0 | 0 | 285 | |
| SQA015938 | 2C (P2-C) | 3801 | 4766 | 0 | 0 | 966 | |
| SQA015939 | 3'UTR | 6993 | 7040 | 0 | 0 | 48 | |
| SQA015940 | 3A (P3-A) | 4767 | 4997 | 0 | 0 | 231 | |
| SQA015941 | 3B (VPg) | 4998 | 5060 | 0 | 0 | 63 | |
| SQA015942 | protease 3C | 5061 | 5609 | 0 | 0 | 549 | |
| SQA015943 | 3D | 5610 | 6989 | 0 | 0 | 1380 | |
| SQA015944 | 5'UTR | 1 | 518 | 1 | 0 | 518 | |
| SQA015945 | CDS | 519 | 6992 | 0 | 0 | 6474 | |
| SQA015946 | VP4/2 | 519 | 953 | 0 | 0 | 435 | |
| SQA015947 | genome | 1 | 7047 | 1 | 0 | 7047 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA029630 | protease 3C | 1515 | 1697 | 0 | 0 | 183 | |
| SPA029631 | 3D | 1698 | 2153 | 0 | 0 | 456 | |
| SPA029632 | 3B (VPg) | 1494 | 1514 | 0 | 0 | 21 | |
| SPA029633 | 3A (P3-A) | 1417 | 1493 | 0 | 0 | 77 | |
| SPA029634 | 2C (P2-C) | 1095 | 1416 | 0 | 0 | 322 | |
| SPA029635 | 2B (P2-B) | 1000 | 1094 | 0 | 0 | 95 | |
| SPA029636 | 2A (P2-A) | 858 | 999 | 0 | 0 | 142 | |
| SPA029637 | 1D (VP1) | 573 | 857 | 0 | 0 | 285 | |
| SPA029638 | 1C (VP3) | 333 | 572 | 0 | 0 | 240 | |
| SPA029639 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPA029640 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA029641 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA029642 | CDS | 1 | 2157 | 0 | 0 | 2157 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |