| RVdb StrainID | ANP00037 | GenBank Accession | ON311258.1 |
| Species | RVA | Sequence Length | 7020 nt |
| Serotype | 13 Checked by RVdb | Serotype (GenBank) | 13 |
| Definition | Rhinovirus A13 strain A13_3 polyprotein gene, complete cds | GenBank Submission Date | 2022-07-19 |
| Strain Name | A13_3 | Sampling Date | 2020-11-17 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 185893 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA015805 | 1A (VP4) | 529 | 735 | 0 | 0 | 207 | |
| SQA015806 | 1B (VP2) | 736 | 1524 | 0 | 0 | 789 | |
| SQA015807 | 1C (VP3) | 1525 | 2238 | 0 | 0 | 714 | |
| SQA015808 | 1D (VP1) | 2239 | 3108 | 0 | 0 | 870 | |
| SQA015809 | 2A (P2-A) | 3109 | 3534 | 0 | 0 | 426 | |
| SQA015810 | 2B (P2-B) | 3535 | 3819 | 0 | 0 | 285 | |
| SQA015811 | 2C (P2-C) | 3820 | 4785 | 0 | 0 | 966 | |
| SQA015812 | 3A (P3-A) | 4786 | 5016 | 0 | 0 | 231 | |
| SQA015813 | 3B (VPg) | 5017 | 5079 | 0 | 0 | 63 | |
| SQA015814 | protease 3C | 5080 | 5628 | 0 | 0 | 549 | |
| SQA015815 | 3D | 5629 | 7008 | 0 | 0 | 1380 | |
| SQA015816 | 5'UTR | 1 | 528 | 1 | 0 | 528 | |
| SQA015817 | CDS | 529 | 7011 | 0 | 0 | 6483 | |
| SQA015818 | VP4/2 | 529 | 963 | 0 | 0 | 435 | |
| SQA015819 | genome | 1 | 7020 | 1 | 1 | 7020 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA030148 | protease 3C | 1518 | 1700 | 0 | 0 | 183 | |
| SPA030149 | 3D | 1701 | 2160 | 0 | 0 | 460 | |
| SPA030150 | 3B (VPg) | 1497 | 1517 | 0 | 0 | 21 | |
| SPA030151 | 3A (P3-A) | 1420 | 1496 | 0 | 0 | 77 | |
| SPA030152 | 2C (P2-C) | 1098 | 1419 | 0 | 0 | 322 | |
| SPA030153 | 2B (P2-B) | 1003 | 1097 | 0 | 0 | 95 | |
| SPA030154 | 2A (P2-A) | 861 | 1002 | 0 | 0 | 142 | |
| SPA030155 | 1D (VP1) | 571 | 860 | 0 | 0 | 290 | |
| SPA030156 | 1C (VP3) | 333 | 570 | 0 | 0 | 238 | |
| SPA030157 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPA030158 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA030159 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA030160 | CDS | 1 | 2160 | 0 | 0 | 2160 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |