| RVdb StrainID | ANP00032 | GenBank Accession | ON311263.1 |
| Species | RVA | Sequence Length | 7069 nt |
| Serotype | 11 Checked by RVdb | Serotype (GenBank) | 11 |
| Definition | Rhinovirus A11 strain A11_1 polyprotein gene, complete cds | GenBank Submission Date | 2022-07-19 |
| Strain Name | A11_1 | Sampling Date | 2020-09-02 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 39767 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA015789 | 1A (VP4) | 583 | 789 | 0 | 0 | 207 | |
| SQA015790 | 1B (VP2) | 790 | 1569 | 0 | 0 | 780 | |
| SQA015791 | 1C (VP3) | 1570 | 2283 | 0 | 0 | 714 | |
| SQA015792 | 1D (VP1) | 2284 | 3141 | 0 | 0 | 858 | |
| SQA015793 | 2A (P2-A) | 3142 | 3567 | 0 | 0 | 426 | |
| SQA015794 | 2B (P2-B) | 3568 | 3852 | 0 | 0 | 285 | |
| SQA015795 | 2C (P2-C) | 3853 | 4818 | 0 | 0 | 966 | |
| SQA015796 | 3'UTR | 7045 | 7069 | 0 | 1 | 25 | |
| SQA015797 | 3A (P3-A) | 4819 | 5049 | 0 | 0 | 231 | |
| SQA015798 | 3B (VPg) | 5050 | 5112 | 0 | 0 | 63 | |
| SQA015799 | protease 3C | 5113 | 5661 | 0 | 0 | 549 | |
| SQA015800 | 3D | 5662 | 7041 | 0 | 0 | 1380 | |
| SQA015801 | 5'UTR | 1 | 582 | 1 | 0 | 582 | |
| SQA015802 | CDS | 583 | 7044 | 0 | 0 | 6462 | |
| SQA015803 | VP4/2 | 583 | 1017 | 0 | 0 | 435 | |
| SQA015804 | genome | 1 | 7069 | 1 | 1 | 7069 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA030213 | protease 3C | 1511 | 1693 | 0 | 0 | 183 | |
| SPA030214 | 3D | 1694 | 2149 | 0 | 0 | 456 | |
| SPA030215 | 3B (VPg) | 1490 | 1510 | 0 | 0 | 21 | |
| SPA030216 | 3A (P3-A) | 1413 | 1489 | 0 | 0 | 77 | |
| SPA030217 | 2C (P2-C) | 1091 | 1412 | 0 | 0 | 322 | |
| SPA030218 | 2B (P2-B) | 996 | 1090 | 0 | 0 | 95 | |
| SPA030219 | 2A (P2-A) | 854 | 995 | 0 | 0 | 142 | |
| SPA030220 | 1D (VP1) | 568 | 853 | 0 | 0 | 286 | |
| SPA030221 | 1C (VP3) | 330 | 567 | 0 | 0 | 238 | |
| SPA030222 | 1B (VP2) | 70 | 329 | 0 | 0 | 260 | |
| SPA030223 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA030224 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA030225 | CDS | 1 | 2153 | 0 | 0 | 2153 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |