| RVdb StrainID | ANP00017 | GenBank Accession | ON729331.1 |
| Species | RVA | Sequence Length | 7012 nt |
| Serotype | 94 Checked by RVdb | Serotype (GenBank) | 94 |
| Definition | Rhinovirus A94 strain SC177, complete genome | GenBank Submission Date | 2022-07-20 |
| Strain Name | SC177 | Sampling Date | 2017 |
| Sampling Country | USA | Sampling location | Seattle, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 185941 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA015741 | 1A (VP4) | 529 | 735 | 0 | 0 | 207 | |
| SQA015742 | 1B (VP2) | 736 | 1518 | 0 | 0 | 783 | |
| SQA015743 | 1C (VP3) | 1519 | 2229 | 0 | 0 | 711 | |
| SQA015744 | 1D (VP1) | 2230 | 3096 | 0 | 0 | 867 | |
| SQA015745 | 2A (P2-A) | 3097 | 3522 | 0 | 0 | 426 | |
| SQA015746 | 2B (P2-B) | 3523 | 3807 | 0 | 0 | 285 | |
| SQA015747 | 2C (P2-C) | 3808 | 4773 | 0 | 0 | 966 | |
| SQA015748 | 3'UTR | 7000 | 7012 | 0 | 1 | 13 | |
| SQA015749 | 3A (P3-A) | 4774 | 5004 | 0 | 0 | 231 | |
| SQA015750 | 3B (VPg) | 5005 | 5067 | 0 | 0 | 63 | |
| SQA015751 | protease 3C | 5068 | 5616 | 0 | 0 | 549 | |
| SQA015752 | 3D | 5617 | 6996 | 0 | 0 | 1380 | |
| SQA015753 | 5'UTR | 1 | 528 | 1 | 0 | 528 | |
| SQA015754 | CDS | 529 | 6999 | 0 | 0 | 6471 | |
| SQA015755 | VP4/2 | 529 | 963 | 0 | 0 | 435 | |
| SQA015756 | genome | 1 | 7012 | 1 | 1 | 7012 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA030408 | protease 3C | 1514 | 1696 | 0 | 0 | 183 | |
| SPA030409 | 3D | 1697 | 2156 | 0 | 0 | 460 | |
| SPA030410 | 3B (VPg) | 1493 | 1513 | 0 | 0 | 21 | |
| SPA030411 | 3A (P3-A) | 1416 | 1492 | 0 | 0 | 77 | |
| SPA030412 | 2C (P2-C) | 1094 | 1415 | 0 | 0 | 322 | |
| SPA030413 | 2B (P2-B) | 999 | 1093 | 0 | 0 | 95 | |
| SPA030414 | 2A (P2-A) | 857 | 998 | 0 | 0 | 142 | |
| SPA030415 | 1D (VP1) | 568 | 856 | 0 | 0 | 289 | |
| SPA030416 | 1C (VP3) | 331 | 567 | 0 | 0 | 237 | |
| SPA030417 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPA030418 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA030419 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA030420 | CDS | 1 | 2156 | 0 | 0 | 2156 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |