| RVdb StrainID | ANM07560 | GenBank Accession | HQ123441.1 |
| Species | RVA | Sequence Length | 6468 nt |
| Serotype | 12 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Human rhinovirus A strain CU107 polyprotein gene, complete cds | GenBank Submission Date | 2011-01-23 |
| Strain Name | CU107 | Sampling Date | 2006-07-07 |
| Sampling Country | Thailand | Sampling location | -N/A- |
| Isolation Source | nasopharyngeal aspirates of patients | NCBI Taxon ID | 147711 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA014583 | 1A (VP4) | 1 | 207 | 0 | 0 | 207 | |
| SQA014584 | 1B (VP2) | 208 | 996 | 0 | 0 | 789 | |
| SQA014585 | 1C (VP3) | 997 | 1710 | 0 | 0 | 714 | |
| SQA014586 | 1D (VP1) | 1711 | 2571 | 0 | 0 | 861 | |
| SQA014587 | 2A (P2-A) | 2572 | 3000 | 0 | 0 | 429 | |
| SQA014588 | 2B (P2-B) | 3001 | 3285 | 0 | 0 | 285 | |
| SQA014589 | 2C (P2-C) | 3286 | 4245 | 0 | 0 | 960 | |
| SQA014590 | 3A (P3-A) | 4246 | 4476 | 0 | 0 | 231 | |
| SQA014591 | 3B (VPg) | 4477 | 4539 | 0 | 0 | 63 | |
| SQA014592 | protease 3C | 4540 | 5088 | 0 | 0 | 549 | |
| SQA014593 | 3D | 5089 | 6465 | 0 | 0 | 1377 | |
| SQA014594 | CDS | 1 | 6468 | 0 | 0 | 6468 | |
| SQA014595 | VP4/2 | 1 | 435 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA002332 | protease 3C | 1514 | 1696 | 0 | 0 | 183 | |
| SPA002333 | 3D | 1697 | 2153 | 0 | 0 | 457 | |
| SPA002334 | 3B (VPg) | 1493 | 1513 | 0 | 0 | 21 | |
| SPA002335 | 3A (P3-A) | 1416 | 1492 | 0 | 0 | 77 | |
| SPA002336 | 2C (P2-C) | 1096 | 1415 | 0 | 0 | 320 | |
| SPA002337 | 2B (P2-B) | 1001 | 1095 | 0 | 0 | 95 | |
| SPA002338 | 2A (P2-A) | 858 | 1000 | 0 | 0 | 143 | |
| SPA002339 | 1D (VP1) | 571 | 857 | 0 | 0 | 287 | |
| SPA002340 | 1C (VP3) | 333 | 570 | 0 | 0 | 238 | |
| SPA002341 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPA002342 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA002343 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA002344 | CDS | 1 | 2155 | 0 | 0 | 2155 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 21214911 | Complete coding sequence characterization and comparative analysis of the putative novel human rhinovirus (HRV) species C and B. | 2011 | Virol J | View More |