| RVdb StrainID | ANM06550 | GenBank Accession | KC881032.1 |
| Species | RVA | Sequence Length | 7116 nt |
| Serotype | 1 Corrected by RVdb | Serotype (GenBank) | 1B |
| Definition | Human rhinovirus 1B strain HRV-1B_P1 polyprotein gene, complete cds | GenBank Submission Date | 2015-05-06 |
| Strain Name | HRV-1B_P1 | Sampling Date | 2011 |
| Sampling Country | USA | Sampling location | -N/A- |
| Isolation Source | -N/A- | NCBI Taxon ID | 2777147 |
| Sequencing Technology | Sanger dideoxy sequencing | Assembly Method | CLC DNA Workbench v. 6 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA013734 | 1A (VP4) | 608 | 814 | 0 | 0 | 207 | |
| SQA013735 | 1B (VP2) | 815 | 1603 | 0 | 0 | 789 | |
| SQA013736 | 1C (VP3) | 1604 | 2317 | 0 | 0 | 714 | |
| SQA013737 | 1D (VP1) | 2318 | 3178 | 0 | 0 | 861 | |
| SQA013738 | 2A (P2-A) | 3179 | 3604 | 0 | 0 | 426 | |
| SQA013739 | 2B (P2-B) | 3605 | 3889 | 0 | 0 | 285 | |
| SQA013740 | 2C (P2-C) | 3890 | 4855 | 0 | 0 | 966 | |
| SQA013741 | 3'UTR | 7082 | 7116 | 0 | 1 | 35 | |
| SQA013742 | 3A (P3-A) | 4856 | 5086 | 0 | 0 | 231 | |
| SQA013743 | 3B (VPg) | 5087 | 5149 | 0 | 0 | 63 | |
| SQA013744 | protease 3C | 5150 | 5698 | 0 | 0 | 549 | |
| SQA013745 | 3D | 5699 | 7078 | 0 | 0 | 1380 | |
| SQA013746 | 5'UTR | 1 | 607 | 1 | 0 | 607 | |
| SQA013747 | CDS | 608 | 7081 | 0 | 0 | 6474 | |
| SQA013748 | VP4/2 | 608 | 1042 | 0 | 0 | 435 | |
| SQA013749 | genome | 1 | 7116 | 1 | 1 | 7116 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA007596 | protease 3C | 1515 | 1697 | 0 | 0 | 183 | |
| SPA007597 | 3D | 1698 | 2157 | 0 | 0 | 460 | |
| SPA007598 | 3B (VPg) | 1494 | 1514 | 0 | 0 | 21 | |
| SPA007599 | 3A (P3-A) | 1417 | 1493 | 0 | 0 | 77 | |
| SPA007600 | 2C (P2-C) | 1095 | 1416 | 0 | 0 | 322 | |
| SPA007601 | 2B (P2-B) | 1000 | 1094 | 0 | 0 | 95 | |
| SPA007602 | 2A (P2-A) | 858 | 999 | 0 | 0 | 142 | |
| SPA007603 | 1D (VP1) | 571 | 857 | 0 | 0 | 287 | |
| SPA007604 | 1C (VP3) | 333 | 570 | 0 | 0 | 238 | |
| SPA007605 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPA007606 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA007607 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA007608 | CDS | 1 | 2157 | 0 | 0 | 2157 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 25561542 | Temperature-dependent innate defense against the common cold virus limits viral replication at warm temperature in mouse airway cells. | 2015 | Proc Natl Acad Sci U S A | View More |