| RVdb StrainID | ANM05080 | GenBank Accession | KR090587.1 |
| Species | RVA | Sequence Length | 7163 nt |
| Serotype | 21 Checked by RVdb | Serotype (GenBank) | 21 |
| Definition | Human rhinovirus A21 isolate rmh123/2013 polyprotein gene, complete cds | GenBank Submission Date | 2016-05-12 |
| Strain Name | rmh123/2013 | Sampling Date | 2013-03-01 |
| Sampling Country | China | Sampling location | Beijing |
| Isolation Source | bronchoalveolar lavage fluid | NCBI Taxon ID | 44128 |
| Sequencing Technology | IonTorrent | Assembly Method | GATK v. 2.5 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA012948 | 1A (VP4) | 615 | 821 | 0 | 0 | 207 | |
| SQA012949 | 1B (VP2) | 822 | 1602 | 0 | 0 | 781 | |
| SQA012950 | 1C (VP3) | 1603 | 2324 | 0 | 0 | 722 | |
| SQA012951 | 1D (VP1) | 2325 | 3185 | 0 | 0 | 861 | |
| SQA012952 | 2A (P2-A) | 3186 | 3611 | 0 | 0 | 426 | |
| SQA012953 | 2B (P2-B) | 3612 | 3896 | 0 | 0 | 285 | |
| SQA012954 | 2C (P2-C) | 3897 | 4862 | 0 | 0 | 966 | |
| SQA012955 | 3'UTR | 7089 | 7134 | 0 | 0 | 46 | |
| SQA012956 | 3A (P3-A) | 4863 | 5093 | 0 | 0 | 231 | |
| SQA012957 | 3B (VPg) | 5094 | 5156 | 0 | 0 | 63 | |
| SQA012958 | protease 3C | 5157 | 5705 | 0 | 0 | 549 | |
| SQA012959 | 3D | 5706 | 7085 | 0 | 0 | 1380 | |
| SQA012960 | 5'UTR | 1 | 614 | 1 | 0 | 614 | |
| SQA012961 | CDS | 615 | 7088 | 0 | 0 | 6474 | |
| SQA012962 | VP4/2 | 615 | 1049 | 0 | 0 | 435 | |
| SQA012963 | genome | 1 | 7163 | 1 | 0 | 7163 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA007812 | protease 3C | 1515 | 1697 | 0 | 0 | 183 | |
| SPA007813 | 3D | 1698 | 2153 | 0 | 0 | 456 | |
| SPA007814 | 3B (VPg) | 1494 | 1514 | 0 | 0 | 21 | |
| SPA007815 | 3A (P3-A) | 1417 | 1493 | 0 | 0 | 77 | |
| SPA007816 | 2C (P2-C) | 1095 | 1416 | 0 | 0 | 322 | |
| SPA007817 | 2B (P2-B) | 1000 | 1094 | 0 | 0 | 95 | |
| SPA007818 | 2A (P2-A) | 858 | 999 | 0 | 0 | 142 | |
| SPA007819 | 1D (VP1) | 571 | 857 | 0 | 0 | 287 | |
| SPA007820 | 1C (VP3) | 330 | 570 | 0 | 0 | 241 | |
| SPA007821 | 1B (VP2) | 70 | 329 | 0 | 0 | 260 | |
| SPA007822 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA007823 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA007824 | CDS | 1 | 2157 | 0 | 0 | 2157 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 28128353 | Genotyping of human rhinovirus in adult patients with acute respiratory infections identified predominant infections of genotype A21. | 2017 | Sci Rep | View More |