| RVdb StrainID | ANM00540 | GenBank Accession | OK161356.1 |
| Species | RVA | Sequence Length | 6966 nt |
| Serotype | 1 Corrected by RVdb | Serotype (GenBank) | 1B |
| Definition | Rhinovirus A1B strain RvA1B/USA/2021/6MDZV3, complete genome | GenBank Submission Date | 2022-05-06 |
| Strain Name | RvA1B/USA/2021/6MDZV3 | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | Seattle, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 2777147 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA009481 | 1A (VP4) | 467 | 673 | 0 | 0 | 207 | |
| SQA009482 | 1B (VP2) | 674 | 1462 | 0 | 0 | 789 | |
| SQA009483 | 1C (VP3) | 1463 | 2173 | 0 | 0 | 711 | |
| SQA009484 | 1D (VP1) | 2174 | 3034 | 0 | 0 | 861 | |
| SQA009485 | 2A (P2-A) | 3035 | 3460 | 0 | 0 | 426 | |
| SQA009486 | 2B (P2-B) | 3461 | 3745 | 0 | 0 | 285 | |
| SQA009487 | 2C (P2-C) | 3746 | 4711 | 0 | 0 | 966 | |
| SQA009488 | 3'UTR | 6938 | 6966 | 0 | 1 | 29 | |
| SQA009489 | 3A (P3-A) | 4712 | 4942 | 0 | 0 | 231 | |
| SQA009490 | 3B (VPg) | 4943 | 5005 | 0 | 0 | 63 | |
| SQA009491 | protease 3C | 5006 | 5554 | 0 | 0 | 549 | |
| SQA009492 | 3D | 5555 | 6934 | 0 | 0 | 1380 | |
| SQA009493 | 5'UTR | 1 | 466 | 1 | 0 | 466 | |
| SQA009494 | CDS | 467 | 6937 | 0 | 0 | 6471 | |
| SQA009495 | VP4/2 | 467 | 901 | 0 | 0 | 435 | |
| SQA009496 | genome | 1 | 6966 | 1 | 1 | 6966 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA021294 | protease 3C | 1514 | 1696 | 0 | 0 | 183 | |
| SPA021295 | 3D | 1697 | 2152 | 0 | 0 | 456 | |
| SPA021296 | 3B (VPg) | 1493 | 1513 | 0 | 0 | 21 | |
| SPA021297 | 3A (P3-A) | 1416 | 1492 | 0 | 0 | 77 | |
| SPA021298 | 2C (P2-C) | 1094 | 1415 | 0 | 0 | 322 | |
| SPA021299 | 2B (P2-B) | 999 | 1093 | 0 | 0 | 95 | |
| SPA021300 | 2A (P2-A) | 857 | 998 | 0 | 0 | 142 | |
| SPA021301 | 1D (VP1) | 570 | 856 | 0 | 0 | 287 | |
| SPA021302 | 1C (VP3) | 333 | 569 | 0 | 0 | 237 | |
| SPA021303 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPA021304 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA021305 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA021306 | CDS | 1 | 2156 | 0 | 0 | 2156 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |