| RVdb StrainID | ANM00530 | GenBank Accession | OK161368.1 |
| Species | RVA | Sequence Length | 7141 nt |
| Serotype | 78 Checked by RVdb | Serotype (GenBank) | 78 |
| Definition | Rhinovirus A78 strain RvA78/USA/2021/3NPTV7, complete genome | GenBank Submission Date | 2022-05-06 |
| Strain Name | RvA78/USA/2021/3NPTV7 | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | Seattle, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 147685 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA009449 | 1A (VP4) | 620 | 826 | 0 | 0 | 207 | |
| SQA009450 | 1B (VP2) | 827 | 1618 | 0 | 0 | 792 | |
| SQA009451 | 1C (VP3) | 1619 | 2332 | 0 | 0 | 714 | |
| SQA009452 | 1D (VP1) | 2333 | 3193 | 0 | 0 | 861 | |
| SQA009453 | 2A (P2-A) | 3194 | 3622 | 0 | 0 | 429 | |
| SQA009454 | 2B (P2-B) | 3623 | 3907 | 0 | 0 | 285 | |
| SQA009455 | 2C (P2-C) | 3908 | 4873 | 0 | 0 | 966 | |
| SQA009456 | 3'UTR | 7100 | 7141 | 0 | 1 | 42 | |
| SQA009457 | 3A (P3-A) | 4874 | 5104 | 0 | 0 | 231 | |
| SQA009458 | 3B (VPg) | 5105 | 5167 | 0 | 0 | 63 | |
| SQA009459 | protease 3C | 5168 | 5716 | 0 | 0 | 549 | |
| SQA009460 | 3D | 5717 | 7096 | 0 | 0 | 1380 | |
| SQA009461 | 5'UTR | 1 | 619 | 0 | 0 | 619 | |
| SQA009462 | CDS | 620 | 7099 | 0 | 0 | 6480 | |
| SQA009463 | VP4/2 | 620 | 1054 | 0 | 0 | 435 | |
| SQA009464 | genome | 1 | 7141 | 0 | 1 | 7141 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA021424 | protease 3C | 1517 | 1699 | 0 | 0 | 183 | |
| SPA021425 | 3D | 1700 | 2159 | 0 | 0 | 460 | |
| SPA021426 | 3B (VPg) | 1496 | 1516 | 0 | 0 | 21 | |
| SPA021427 | 3A (P3-A) | 1419 | 1495 | 0 | 0 | 77 | |
| SPA021428 | 2C (P2-C) | 1097 | 1418 | 0 | 0 | 322 | |
| SPA021429 | 2B (P2-B) | 1002 | 1096 | 0 | 0 | 95 | |
| SPA021430 | 2A (P2-A) | 859 | 1001 | 0 | 0 | 143 | |
| SPA021431 | 1D (VP1) | 572 | 858 | 0 | 0 | 287 | |
| SPA021432 | 1C (VP3) | 334 | 571 | 0 | 0 | 238 | |
| SPA021433 | 1B (VP2) | 70 | 333 | 0 | 0 | 264 | |
| SPA021434 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA021435 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA021436 | CDS | 1 | 2159 | 0 | 0 | 2159 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |