| RVdb StrainID | ANM00525 | GenBank Accession | OK161374.1 |
| Species | RVA | Sequence Length | 7045 nt |
| Serotype | 78 Checked by RVdb | Serotype (GenBank) | 78 |
| Definition | Rhinovirus A78 strain RvA78/USA/2021/7VC8Y5, complete genome | GenBank Submission Date | 2022-01-13 |
| Strain Name | RvA78/USA/2021/7VC8Y5 | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | Seattle, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 147685 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA009433 | 1A (VP4) | 527 | 733 | 0 | 0 | 207 | |
| SQA009434 | 1B (VP2) | 734 | 1525 | 0 | 0 | 792 | |
| SQA009435 | 1C (VP3) | 1526 | 2239 | 0 | 0 | 714 | |
| SQA009436 | 1D (VP1) | 2240 | 3100 | 0 | 0 | 861 | |
| SQA009437 | 2A (P2-A) | 3101 | 3529 | 0 | 0 | 429 | |
| SQA009438 | 2B (P2-B) | 3530 | 3814 | 0 | 0 | 285 | |
| SQA009439 | 2C (P2-C) | 3815 | 4780 | 0 | 0 | 966 | |
| SQA009440 | 3'UTR | 7007 | 7043 | 0 | 0 | 37 | |
| SQA009441 | 3A (P3-A) | 4781 | 5011 | 0 | 0 | 231 | |
| SQA009442 | 3B (VPg) | 5012 | 5074 | 0 | 0 | 63 | |
| SQA009443 | protease 3C | 5075 | 5623 | 0 | 0 | 549 | |
| SQA009444 | 3D | 5624 | 7003 | 0 | 0 | 1380 | |
| SQA009445 | 5'UTR | 1 | 526 | 1 | 0 | 526 | |
| SQA009446 | CDS | 527 | 7006 | 0 | 0 | 6480 | |
| SQA009447 | VP4/2 | 527 | 961 | 0 | 0 | 435 | |
| SQA009448 | genome | 1 | 7045 | 1 | 0 | 7045 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA021489 | protease 3C | 1517 | 1699 | 0 | 0 | 183 | |
| SPA021490 | 3D | 1700 | 2159 | 0 | 0 | 460 | |
| SPA021491 | 3B (VPg) | 1496 | 1516 | 0 | 0 | 21 | |
| SPA021492 | 3A (P3-A) | 1419 | 1495 | 0 | 0 | 77 | |
| SPA021493 | 2C (P2-C) | 1097 | 1418 | 0 | 0 | 322 | |
| SPA021494 | 2B (P2-B) | 1002 | 1096 | 0 | 0 | 95 | |
| SPA021495 | 2A (P2-A) | 859 | 1001 | 0 | 0 | 143 | |
| SPA021496 | 1D (VP1) | 572 | 858 | 0 | 0 | 287 | |
| SPA021497 | 1C (VP3) | 334 | 571 | 0 | 0 | 238 | |
| SPA021498 | 1B (VP2) | 70 | 333 | 0 | 0 | 264 | |
| SPA021499 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA021500 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA021501 | CDS | 1 | 2159 | 0 | 0 | 2159 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |