| RVdb StrainID | ANM00510 | GenBank Accession | OK161393.1 |
| Species | RVA | Sequence Length | 7089 nt |
| Serotype | 101 Checked by RVdb | Serotype (GenBank) | 101 |
| Definition | Rhinovirus A101 strain RvA101/USA/2021/MXCX3F, complete genome | GenBank Submission Date | 2022-05-06 |
| Strain Name | RvA101/USA/2021/MXCX3F | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | Seattle, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 1219381 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA009385 | 1A (VP4) | 575 | 781 | 0 | 0 | 207 | |
| SQA009386 | 1B (VP2) | 782 | 1564 | 0 | 0 | 783 | |
| SQA009387 | 1C (VP3) | 1565 | 2278 | 0 | 0 | 714 | |
| SQA009388 | 1D (VP1) | 2279 | 3145 | 0 | 0 | 867 | |
| SQA009389 | 2A (P2-A) | 3146 | 3574 | 0 | 0 | 429 | |
| SQA009390 | 2B (P2-B) | 3575 | 3859 | 0 | 0 | 285 | |
| SQA009391 | 2C (P2-C) | 3860 | 4822 | 0 | 0 | 963 | |
| SQA009392 | 3'UTR | 7049 | 7089 | 0 | 0 | 41 | |
| SQA009393 | 3A (P3-A) | 4823 | 5056 | 0 | 0 | 234 | |
| SQA009394 | 3B (VPg) | 5057 | 5119 | 0 | 0 | 63 | |
| SQA009395 | 3D | 5669 | 7045 | 0 | 0 | 1377 | |
| SQA009396 | 5'UTR | 1 | 574 | 1 | 0 | 574 | |
| SQA009397 | CDS | 575 | 7048 | 0 | 0 | 6474 | |
| SQA009398 | protease 3C | 5120 | 5668 | 0 | 0 | 549 | |
| SQA009399 | VP4/2 | 575 | 1009 | 0 | 0 | 435 | |
| SQA009400 | genome | 1 | 7089 | 1 | 0 | 7089 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA021684 | protease 3C | 1516 | 1698 | 0 | 0 | 183 | |
| SPA021685 | 3D | 1699 | 2157 | 0 | 0 | 459 | |
| SPA021686 | 3B (VPg) | 1495 | 1515 | 0 | 0 | 21 | |
| SPA021687 | 3A (P3-A) | 1417 | 1494 | 0 | 0 | 78 | |
| SPA021688 | 2C (P2-C) | 1096 | 1416 | 0 | 0 | 321 | |
| SPA021689 | 2B (P2-B) | 1001 | 1095 | 0 | 0 | 95 | |
| SPA021690 | 2A (P2-A) | 858 | 1000 | 0 | 0 | 143 | |
| SPA021691 | 1D (VP1) | 569 | 857 | 0 | 0 | 289 | |
| SPA021692 | 1C (VP3) | 331 | 568 | 0 | 0 | 238 | |
| SPA021693 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPA021694 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA021695 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA021696 | CDS | 1 | 2157 | 0 | 0 | 2157 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |