| RVdb StrainID | ANM00465 | GenBank Accession | OK181484.1 |
| Species | RVA | Sequence Length | 7086 nt |
| Serotype | 31 Checked by RVdb | Serotype (GenBank) | 31 |
| Definition | Rhinovirus A31 strain RvA31/USA/2021/LUSRTV, complete genome | GenBank Submission Date | 2022-01-13 |
| Strain Name | RvA31/USA/2021/LUSRTV | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | Seattle, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 185902 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA009242 | 1A (VP4) | 561 | 767 | 0 | 0 | 207 | |
| SQA009243 | 1B (VP2) | 768 | 1568 | 0 | 0 | 801 | |
| SQA009244 | 1C (VP3) | 1569 | 2282 | 0 | 0 | 714 | |
| SQA009245 | 1D (VP1) | 2283 | 3137 | 0 | 0 | 855 | |
| SQA009246 | 2A (P2-A) | 3138 | 3563 | 0 | 0 | 426 | |
| SQA009247 | 2B (P2-B) | 3564 | 3848 | 0 | 0 | 285 | |
| SQA009248 | 2C (P2-C) | 3849 | 4814 | 0 | 0 | 966 | |
| SQA009249 | 3'UTR | 7041 | 7086 | 0 | 0 | 46 | |
| SQA009250 | 3A (P3-A) | 4815 | 5045 | 0 | 0 | 231 | |
| SQA009251 | 3B (VPg) | 5046 | 5108 | 0 | 0 | 63 | |
| SQA009252 | protease 3C | 5109 | 5657 | 0 | 0 | 549 | |
| SQA009253 | 3D | 5658 | 7037 | 0 | 0 | 1380 | |
| SQA009254 | 5'UTR | 1 | 560 | 1 | 0 | 560 | |
| SQA009255 | CDS | 561 | 7040 | 0 | 0 | 6480 | |
| SQA009256 | VP4/2 | 561 | 995 | 0 | 0 | 435 | |
| SQA009257 | genome | 1 | 7086 | 1 | 0 | 7086 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA022269 | protease 3C | 1517 | 1699 | 0 | 0 | 183 | |
| SPA022270 | 3D | 1700 | 2159 | 0 | 0 | 460 | |
| SPA022271 | 3B (VPg) | 1496 | 1516 | 0 | 0 | 21 | |
| SPA022272 | 3A (P3-A) | 1419 | 1495 | 0 | 0 | 77 | |
| SPA022273 | 2C (P2-C) | 1097 | 1418 | 0 | 0 | 322 | |
| SPA022274 | 2B (P2-B) | 1002 | 1096 | 0 | 0 | 95 | |
| SPA022275 | 2A (P2-A) | 860 | 1001 | 0 | 0 | 142 | |
| SPA022276 | 1D (VP1) | 575 | 859 | 0 | 0 | 285 | |
| SPA022277 | 1C (VP3) | 335 | 574 | 0 | 0 | 240 | |
| SPA022278 | 1B (VP2) | 70 | 334 | 0 | 0 | 265 | |
| SPA022279 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA022280 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA022281 | CDS | 1 | 2159 | 0 | 0 | 2159 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |