| RVdb StrainID | ANM00420 | GenBank Accession | OK254865.1 |
| Species | RVA | Sequence Length | 6992 nt |
| Serotype | 1 Corrected by RVdb | Serotype (GenBank) | 1B |
| Definition | Rhinovirus A1B strain RvA1B/USA/2021/MAPNPK, complete genome | GenBank Submission Date | 2022-05-06 |
| Strain Name | RvA1B/USA/2021/MAPNPK | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | Seattle, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 2777147 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA009098 | 1A (VP4) | 508 | 714 | 0 | 0 | 207 | |
| SQA009099 | 1B (VP2) | 715 | 1503 | 0 | 0 | 789 | |
| SQA009100 | 1C (VP3) | 1504 | 2214 | 0 | 0 | 711 | |
| SQA009101 | 1D (VP1) | 2215 | 3075 | 0 | 0 | 861 | |
| SQA009102 | 2A (P2-A) | 3076 | 3501 | 0 | 0 | 426 | |
| SQA009103 | 2B (P2-B) | 3502 | 3786 | 0 | 0 | 285 | |
| SQA009104 | 2C (P2-C) | 3787 | 4752 | 0 | 0 | 966 | |
| SQA009105 | 3'UTR | 6979 | 6992 | 0 | 1 | 14 | |
| SQA009106 | 3A (P3-A) | 4753 | 4983 | 0 | 0 | 231 | |
| SQA009107 | 3B (VPg) | 4984 | 5046 | 0 | 0 | 63 | |
| SQA009108 | protease 3C | 5047 | 5595 | 0 | 0 | 549 | |
| SQA009109 | 3D | 5596 | 6975 | 0 | 0 | 1380 | |
| SQA009110 | 5'UTR | 1 | 507 | 1 | 0 | 507 | |
| SQA009111 | CDS | 508 | 6978 | 0 | 0 | 6471 | |
| SQA009112 | VP4/2 | 508 | 942 | 0 | 0 | 435 | |
| SQA009113 | genome | 1 | 6992 | 1 | 1 | 6992 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA023545 | protease 3C | 1514 | 1696 | 0 | 0 | 183 | |
| SPA023546 | 3D | 1697 | 2152 | 0 | 0 | 456 | |
| SPA023547 | 3B (VPg) | 1493 | 1513 | 0 | 0 | 21 | |
| SPA023548 | 3A (P3-A) | 1416 | 1492 | 0 | 0 | 77 | |
| SPA023549 | 2C (P2-C) | 1094 | 1415 | 0 | 0 | 322 | |
| SPA023550 | 2B (P2-B) | 999 | 1093 | 0 | 0 | 95 | |
| SPA023551 | 2A (P2-A) | 857 | 998 | 0 | 0 | 142 | |
| SPA023552 | 1D (VP1) | 570 | 856 | 0 | 0 | 287 | |
| SPA023553 | 1C (VP3) | 333 | 569 | 0 | 0 | 237 | |
| SPA023554 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPA023555 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA023556 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA023557 | CDS | 1 | 2156 | 0 | 0 | 2156 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |