| RVdb StrainID | ANM00330 | GenBank Accession | OK649385.1 |
| Species | RVA | Sequence Length | 7037 nt |
| Serotype | 101 Checked by RVdb | Serotype (GenBank) | 101 |
| Definition | Rhinovirus A101 strain RvA101/USA/2021/DX87ST, complete genome | GenBank Submission Date | 2022-06-08 |
| Strain Name | RvA101/USA/2021/DX87ST | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | Seattle, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 1219381 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA008810 | 1A (VP4) | 539 | 745 | 0 | 0 | 207 | |
| SQA008811 | 1B (VP2) | 746 | 1511 | 0 | 0 | 766 | |
| SQA008812 | 1C (VP3) | 1512 | 2245 | 0 | 0 | 734 | |
| SQA008813 | 1D (VP1) | 2246 | 3112 | 0 | 0 | 867 | |
| SQA008814 | 2A (P2-A) | 3113 | 3541 | 0 | 0 | 429 | |
| SQA008815 | 2B (P2-B) | 3542 | 3826 | 0 | 0 | 285 | |
| SQA008816 | 2C (P2-C) | 3827 | 4789 | 0 | 0 | 963 | |
| SQA008817 | 3'UTR | 7016 | 7037 | 0 | 1 | 22 | |
| SQA008818 | 3A (P3-A) | 4790 | 5023 | 0 | 0 | 234 | |
| SQA008819 | 3B (VPg) | 5024 | 5086 | 0 | 0 | 63 | |
| SQA008820 | protease 3C | 5087 | 5635 | 0 | 0 | 549 | |
| SQA008821 | 3D | 5636 | 7012 | 0 | 0 | 1377 | |
| SQA008822 | 5'UTR | 1 | 538 | 1 | 0 | 538 | |
| SQA008823 | CDS | 539 | 7015 | 0 | 0 | 6477 | |
| SQA008824 | VP4/2 | 539 | 973 | 0 | 0 | 435 | |
| SQA008825 | genome | 1 | 7037 | 1 | 1 | 7037 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA025196 | protease 3C | 1517 | 1699 | 0 | 0 | 183 | |
| SPA025197 | 3D | 1700 | 2158 | 0 | 0 | 459 | |
| SPA025198 | 3B (VPg) | 1496 | 1516 | 0 | 0 | 21 | |
| SPA025199 | 3A (P3-A) | 1418 | 1495 | 0 | 0 | 78 | |
| SPA025200 | 2C (P2-C) | 1097 | 1417 | 0 | 0 | 321 | |
| SPA025201 | 2B (P2-B) | 1002 | 1096 | 0 | 0 | 95 | |
| SPA025202 | 2A (P2-A) | 859 | 1001 | 0 | 0 | 143 | |
| SPA025203 | 1D (VP1) | 570 | 858 | 0 | 0 | 289 | |
| SPA025204 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA025205 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA025206 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA025207 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA025208 | CDS | 1 | 2158 | 0 | 0 | 2158 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |