RVdb StrainID | ANM00255 | GenBank Accession | OL638413.1 |
Species | RVA | Sequence Length | 7103 nt |
Serotype | 29 Checked by RVdb | Serotype (GenBank) | 29 |
Definition | Rhinovirus A29 strain RvA29/USA/2021/7FWBW5, complete genome | GenBank Submission Date | 2022-06-08 |
Strain Name | RvA29/USA/2021/7FWBW5 | Sampling Date | 2021 |
Sampling Country | USA | Sampling location | Seattle, Washington |
Isolation Source | -N/A- | NCBI Taxon ID | 44129 |
Sequencing Technology | -N/A- | Assembly Method | -N/A- |
SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
---|---|---|---|---|---|---|---|
SQA008570 | 1A (VP4) | 593 | 799 | 0 | 0 | 207 | |
SQA008571 | 1B (VP2) | 800 | 1597 | 0 | 0 | 798 | |
SQA008572 | 1C (VP3) | 1598 | 2311 | 0 | 0 | 714 | |
SQA008573 | 1D (VP1) | 2312 | 3154 | 0 | 0 | 843 | |
SQA008574 | 2A (P2-A) | 3155 | 3580 | 0 | 0 | 426 | |
SQA008575 | 2B (P2-B) | 3581 | 3865 | 0 | 0 | 285 | |
SQA008576 | 2C (P2-C) | 3866 | 4831 | 0 | 0 | 966 | |
SQA008577 | 3'UTR | 7058 | 7103 | 0 | 0 | 46 | |
SQA008578 | 3A (P3-A) | 4832 | 5062 | 0 | 0 | 231 | |
SQA008579 | 3B (VPg) | 5063 | 5125 | 0 | 0 | 63 | |
SQA008580 | protease 3C | 5126 | 5674 | 0 | 0 | 549 | |
SQA008581 | 3D | 5675 | 7054 | 0 | 0 | 1380 | |
SQA008582 | 5'UTR | 1 | 592 | 1 | 0 | 592 | |
SQA008583 | CDS | 593 | 7057 | 0 | 0 | 6465 | |
SQA008584 | VP4/2 | 593 | 1027 | 0 | 0 | 435 | |
SQA008585 | genome | 1 | 7103 | 1 | 0 | 7103 |
SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
---|---|---|---|---|---|---|---|
SPA025690 | protease 3C | 1512 | 1694 | 0 | 0 | 183 | |
SPA025691 | 3D | 1695 | 2150 | 0 | 0 | 456 | |
SPA025692 | 3B (VPg) | 1491 | 1511 | 0 | 0 | 21 | |
SPA025693 | 3A (P3-A) | 1414 | 1490 | 0 | 0 | 77 | |
SPA025694 | 2C (P2-C) | 1092 | 1413 | 0 | 0 | 322 | |
SPA025695 | 2B (P2-B) | 997 | 1091 | 0 | 0 | 95 | |
SPA025696 | 2A (P2-A) | 855 | 996 | 0 | 0 | 142 | |
SPA025697 | 1D (VP1) | 574 | 854 | 0 | 0 | 281 | |
SPA025698 | 1C (VP3) | 334 | 573 | 0 | 0 | 240 | |
SPA025699 | 1B (VP2) | 70 | 333 | 0 | 0 | 264 | |
SPA025700 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
SPA025701 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
SPA025702 | CDS | 1 | 2154 | 0 | 0 | 2154 |
PMID | Title | Publication Year | Journal | View in RVdb |
---|---|---|---|---|
35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |