| RVdb StrainID | ANM00185 | GenBank Accession | OM001353.1 |
| Species | RVA | Sequence Length | 7040 nt |
| Serotype | 101 Checked by RVdb | Serotype (GenBank) | 101 |
| Definition | Rhinovirus A101 strain RvA101/USA/2021/RTCGPQ, complete genome | GenBank Submission Date | 2022-01-13 |
| Strain Name | RvA101/USA/2021/RTCGPQ | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | Seattle, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 1219381 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA008347 | 1A (VP4) | 542 | 748 | 0 | 0 | 207 | |
| SQA008348 | 1B (VP2) | 749 | 1516 | 0 | 0 | 768 | |
| SQA008349 | 1C (VP3) | 1517 | 2248 | 0 | 0 | 732 | |
| SQA008350 | 1D (VP1) | 2249 | 3115 | 0 | 0 | 867 | |
| SQA008351 | 2A (P2-A) | 3116 | 3544 | 0 | 0 | 429 | |
| SQA008352 | 2B (P2-B) | 3545 | 3829 | 0 | 0 | 285 | |
| SQA008353 | 2C (P2-C) | 3830 | 4792 | 0 | 0 | 963 | |
| SQA008354 | 3'UTR | 7019 | 7040 | 0 | 1 | 22 | |
| SQA008355 | 3A (P3-A) | 4793 | 5026 | 0 | 0 | 234 | |
| SQA008356 | 3B (VPg) | 5027 | 5089 | 0 | 0 | 63 | |
| SQA008357 | protease 3C | 5090 | 5638 | 0 | 0 | 549 | |
| SQA008358 | 3D | 5639 | 7015 | 0 | 0 | 1377 | |
| SQA008359 | 5'UTR | 1 | 541 | 1 | 0 | 541 | |
| SQA008360 | CDS | 542 | 7018 | 0 | 0 | 6477 | |
| SQA008361 | VP4/2 | 542 | 976 | 0 | 0 | 435 | |
| SQA008362 | genome | 1 | 7040 | 1 | 1 | 7040 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA026340 | protease 3C | 1517 | 1699 | 0 | 0 | 183 | |
| SPA026341 | 3D | 1700 | 2158 | 0 | 0 | 459 | |
| SPA026342 | 3B (VPg) | 1496 | 1516 | 0 | 0 | 21 | |
| SPA026343 | 3A (P3-A) | 1418 | 1495 | 0 | 0 | 78 | |
| SPA026344 | 2C (P2-C) | 1097 | 1417 | 0 | 0 | 321 | |
| SPA026345 | 2B (P2-B) | 1002 | 1096 | 0 | 0 | 95 | |
| SPA026346 | 2A (P2-A) | 859 | 1001 | 0 | 0 | 143 | |
| SPA026347 | 1D (VP1) | 570 | 858 | 0 | 0 | 289 | |
| SPA026348 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA026349 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA026350 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA026351 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA026352 | CDS | 1 | 2158 | 0 | 0 | 2158 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |