| RVdb StrainID | ANM00130 | GenBank Accession | OM001420.1 |
| Species | RVA | Sequence Length | 7039 nt |
| Serotype | 101 Checked by RVdb | Serotype (GenBank) | 101 |
| Definition | Rhinovirus A101 strain RvA101/USA/2021/CJ9SQ3, complete genome | GenBank Submission Date | 2022-01-13 |
| Strain Name | RvA101/USA/2021/CJ9SQ3 | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | Seattle, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 1219381 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA008171 | 1A (VP4) | 541 | 747 | 0 | 0 | 207 | |
| SQA008172 | 1B (VP2) | 748 | 1513 | 0 | 0 | 766 | |
| SQA008173 | 1C (VP3) | 1514 | 2247 | 0 | 0 | 734 | |
| SQA008174 | 1D (VP1) | 2248 | 3114 | 0 | 0 | 867 | |
| SQA008175 | 2A (P2-A) | 3115 | 3543 | 0 | 0 | 429 | |
| SQA008176 | 2B (P2-B) | 3544 | 3828 | 0 | 0 | 285 | |
| SQA008177 | 2C (P2-C) | 3829 | 4791 | 0 | 0 | 963 | |
| SQA008178 | 3'UTR | 7018 | 7039 | 0 | 1 | 22 | |
| SQA008179 | 3A (P3-A) | 4792 | 5025 | 0 | 0 | 234 | |
| SQA008180 | 3B (VPg) | 5026 | 5088 | 0 | 0 | 63 | |
| SQA008181 | protease 3C | 5089 | 5637 | 0 | 0 | 549 | |
| SQA008182 | 3D | 5638 | 7014 | 0 | 0 | 1377 | |
| SQA008183 | 5'UTR | 1 | 540 | 1 | 0 | 540 | |
| SQA008184 | CDS | 541 | 7017 | 0 | 0 | 6477 | |
| SQA008185 | VP4/2 | 541 | 975 | 0 | 0 | 435 | |
| SQA008186 | genome | 1 | 7039 | 1 | 1 | 7039 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA027055 | protease 3C | 1517 | 1699 | 0 | 0 | 183 | |
| SPA027056 | 3D | 1700 | 2158 | 0 | 0 | 459 | |
| SPA027057 | 3B (VPg) | 1496 | 1516 | 0 | 0 | 21 | |
| SPA027058 | 3A (P3-A) | 1418 | 1495 | 0 | 0 | 78 | |
| SPA027059 | 2C (P2-C) | 1097 | 1417 | 0 | 0 | 321 | |
| SPA027060 | 2B (P2-B) | 1002 | 1096 | 0 | 0 | 95 | |
| SPA027061 | 2A (P2-A) | 859 | 1001 | 0 | 0 | 143 | |
| SPA027062 | 1D (VP1) | 570 | 858 | 0 | 0 | 289 | |
| SPA027063 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA027064 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA027065 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA027066 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA027067 | CDS | 1 | 2158 | 0 | 0 | 2158 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |