| RVdb StrainID | ANM00020 | GenBank Accession | ON729328.1 |
| Species | RVA | Sequence Length | 7137 nt |
| Serotype | 103 Checked by RVdb | Serotype (GenBank) | 103 |
| Definition | Rhinovirus A103 strain SC16, complete genome | GenBank Submission Date | 2022-07-20 |
| Strain Name | SC16 | Sampling Date | 2017 |
| Sampling Country | USA | Sampling location | Seattle, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 1033850 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA007826 | 1A (VP4) | 610 | 816 | 0 | 0 | 207 | |
| SQA007827 | 1B (VP2) | 817 | 1602 | 0 | 0 | 786 | |
| SQA007828 | 1C (VP3) | 1603 | 2319 | 0 | 0 | 717 | |
| SQA007829 | 1D (VP1) | 2320 | 3210 | 0 | 0 | 891 | |
| SQA007830 | 2A (P2-A) | 3211 | 3646 | 0 | 0 | 436 | |
| SQA007831 | 2B (P2-B) | 3647 | 3924 | 0 | 0 | 278 | |
| SQA007832 | 2C (P2-C) | 3925 | 4887 | 0 | 0 | 963 | |
| SQA007833 | 3'UTR | 7114 | 7137 | 0 | 1 | 24 | |
| SQA007834 | 3A (P3-A) | 4888 | 5121 | 0 | 0 | 234 | |
| SQA007835 | 3B (VPg) | 5122 | 5184 | 0 | 0 | 63 | |
| SQA007836 | protease 3C | 5185 | 5733 | 0 | 0 | 549 | |
| SQA007837 | 3D | 5734 | 7110 | 0 | 0 | 1377 | |
| SQA007838 | 5'UTR | 1 | 609 | 1 | 0 | 609 | |
| SQA007839 | CDS | 610 | 7113 | 0 | 0 | 6504 | |
| SQA007840 | VP4/2 | 610 | 1044 | 0 | 0 | 435 | |
| SQA007841 | genome | 1 | 7137 | 1 | 1 | 7137 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA030369 | protease 3C | 1526 | 1708 | 0 | 0 | 183 | |
| SPA030370 | 3D | 1709 | 2167 | 0 | 0 | 459 | |
| SPA030371 | 3B (VPg) | 1505 | 1525 | 0 | 0 | 21 | |
| SPA030372 | 3A (P3-A) | 1427 | 1504 | 0 | 0 | 78 | |
| SPA030373 | 2C (P2-C) | 1106 | 1426 | 0 | 0 | 321 | |
| SPA030374 | 2B (P2-B) | 1011 | 1105 | 0 | 0 | 95 | |
| SPA030375 | 2A (P2-A) | 868 | 1010 | 0 | 0 | 143 | |
| SPA030376 | 1D (VP1) | 571 | 867 | 0 | 0 | 297 | |
| SPA030377 | 1C (VP3) | 332 | 570 | 0 | 0 | 239 | |
| SPA030378 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA030379 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA030380 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA030381 | CDS | 1 | 2167 | 0 | 0 | 2167 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |