| RVdb StrainID | ANM00010 | GenBank Accession | ON729339.1 |
| Species | RVA | Sequence Length | 7124 nt |
| Serotype | 101 Checked by RVdb | Serotype (GenBank) | 101 |
| Definition | Rhinovirus A101 strain SC1270, complete genome | GenBank Submission Date | 2022-07-20 |
| Strain Name | SC1270 | Sampling Date | 2017 |
| Sampling Country | USA | Sampling location | Seattle, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 1219381 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA007795 | 1A (VP4) | 617 | 823 | 0 | 0 | 207 | |
| SQA007796 | 1B (VP2) | 824 | 1606 | 0 | 0 | 783 | |
| SQA007797 | 1C (VP3) | 1607 | 2320 | 0 | 0 | 714 | |
| SQA007798 | 1D (VP1) | 2321 | 3187 | 0 | 0 | 867 | |
| SQA007799 | 2A (P2-A) | 3188 | 3616 | 0 | 0 | 429 | |
| SQA007800 | 2B (P2-B) | 3617 | 3901 | 0 | 0 | 285 | |
| SQA007801 | 2C (P2-C) | 3902 | 4864 | 0 | 0 | 963 | |
| SQA007802 | 3'UTR | 7091 | 7124 | 0 | 1 | 34 | |
| SQA007803 | 3A (P3-A) | 4865 | 5098 | 0 | 0 | 234 | |
| SQA007804 | 3B (VPg) | 5099 | 5161 | 0 | 0 | 63 | |
| SQA007805 | protease 3C | 5162 | 5710 | 0 | 0 | 549 | |
| SQA007806 | 3D | 5711 | 7087 | 0 | 0 | 1377 | |
| SQA007807 | 5'UTR | 1 | 616 | 1 | 0 | 616 | |
| SQA007808 | CDS | 617 | 7090 | 0 | 0 | 6474 | |
| SQA007809 | VP4/2 | 617 | 1051 | 0 | 0 | 435 | |
| SQA007810 | genome | 1 | 7124 | 1 | 1 | 7124 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA030499 | protease 3C | 1516 | 1698 | 0 | 0 | 183 | |
| SPA030500 | 3D | 1699 | 2157 | 0 | 0 | 459 | |
| SPA030501 | 3B (VPg) | 1495 | 1515 | 0 | 0 | 21 | |
| SPA030502 | 3A (P3-A) | 1417 | 1494 | 0 | 0 | 78 | |
| SPA030503 | 2C (P2-C) | 1096 | 1416 | 0 | 0 | 321 | |
| SPA030504 | 2B (P2-B) | 1002 | 1095 | 0 | 0 | 94 | |
| SPA030505 | 2A (P2-A) | 858 | 1001 | 0 | 0 | 144 | |
| SPA030506 | 1D (VP1) | 569 | 857 | 0 | 0 | 289 | |
| SPA030507 | 1C (VP3) | 331 | 568 | 0 | 0 | 238 | |
| SPA030508 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPA030509 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA030510 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA030511 | CDS | 1 | 2157 | 0 | 0 | 2157 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |