| RVdb StrainID | ANC08339 | GenBank Accession | DQ473496.1 |
| Species | RVA | Sequence Length | 7106 nt |
| Serotype | 49 Checked by RVdb | Serotype (GenBank) | 49 |
| Definition | Rhinovirus A49, complete genome | GenBank Submission Date | 2022-01-24 |
| Strain Name | -N/A- | Sampling Date | -N/A- |
| Sampling Country | USA | Sampling location | -N/A- |
| Isolation Source | -N/A- | NCBI Taxon ID | 44131 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA007231 | 1A (VP4) | 613 | 819 | 0 | 0 | 207 | |
| SQA007232 | 1B (VP2) | 820 | 1602 | 0 | 0 | 783 | |
| SQA007233 | 1C (VP3) | 1603 | 2313 | 0 | 0 | 711 | |
| SQA007234 | 1D (VP1) | 2314 | 3162 | 0 | 0 | 849 | |
| SQA007235 | 2A (P2-A) | 3163 | 3588 | 0 | 0 | 426 | |
| SQA007236 | 2B (P2-B) | 3589 | 3873 | 0 | 0 | 285 | |
| SQA007237 | 2C (P2-C) | 3874 | 4839 | 0 | 0 | 966 | |
| SQA007238 | 3'UTR | 7066 | 7106 | 0 | 1 | 41 | |
| SQA007239 | 3A (P3-A) | 4840 | 5070 | 0 | 0 | 231 | |
| SQA007240 | 3B (VPg) | 5071 | 5133 | 0 | 0 | 63 | |
| SQA007241 | protease 3C | 5134 | 5682 | 0 | 0 | 549 | |
| SQA007242 | 3D | 5683 | 7062 | 0 | 0 | 1380 | |
| SQA007243 | 5'UTR | 1 | 612 | 0 | 0 | 612 | |
| SQA007244 | CDS | 613 | 7065 | 0 | 0 | 6453 | |
| SQA007245 | VP4/2 | 613 | 1047 | 0 | 0 | 435 | |
| SQA007246 | genome | 1 | 7106 | 0 | 1 | 7106 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA000594 | protease 3C | 1508 | 1690 | 0 | 0 | 183 | |
| SPA000595 | 3D | 1691 | 2150 | 0 | 0 | 460 | |
| SPA000596 | 3B (VPg) | 1487 | 1507 | 0 | 0 | 21 | |
| SPA000597 | 3A (P3-A) | 1410 | 1486 | 0 | 0 | 77 | |
| SPA000598 | 2C (P2-C) | 1088 | 1409 | 0 | 0 | 322 | |
| SPA000599 | 2B (P2-B) | 993 | 1087 | 0 | 0 | 95 | |
| SPA000600 | 2A (P2-A) | 851 | 992 | 0 | 0 | 142 | |
| SPA000601 | 1D (VP1) | 568 | 850 | 0 | 0 | 283 | |
| SPA000602 | 1C (VP3) | 331 | 567 | 0 | 0 | 237 | |
| SPA000603 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPA000604 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA000605 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA000606 | CDS | 1 | 2150 | 0 | 0 | 2150 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 17477878 | Genome-wide diversity and selective pressure in the human rhinovirus. | 2007 | Virol J | View More |