| RVdb StrainID | ANC00199 | GenBank Accession | OL961540.1 |
| Species | RVA | Sequence Length | 7056 nt |
| Serotype | 49 Checked by RVdb | Serotype (GenBank) | 49 |
| Definition | Rhinovirus A49 strain RvA49/USA/2021/QYDYAG, complete genome | GenBank Submission Date | 2022-01-13 |
| Strain Name | RvA49/USA/2021/QYDYAG | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | Seattle, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 44131 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA000602 | 1A (VP4) | 559 | 765 | 0 | 0 | 207 | |
| SQA000603 | 1B (VP2) | 766 | 1536 | 0 | 0 | 771 | |
| SQA000604 | 1C (VP3) | 1537 | 2259 | 0 | 0 | 723 | |
| SQA000605 | 1D (VP1) | 2260 | 3108 | 0 | 0 | 849 | |
| SQA000606 | 2A (P2-A) | 3109 | 3534 | 0 | 0 | 426 | |
| SQA000607 | 2B (P2-B) | 3535 | 3819 | 0 | 0 | 285 | |
| SQA000608 | 2C (P2-C) | 3820 | 4785 | 0 | 0 | 966 | |
| SQA000609 | 3'UTR | 7012 | 7052 | 0 | 0 | 41 | |
| SQA000610 | 3A (P3-A) | 4786 | 5016 | 0 | 0 | 231 | |
| SQA000611 | 3B (VPg) | 5017 | 5079 | 0 | 0 | 63 | |
| SQA000612 | protease 3C | 5080 | 5628 | 0 | 0 | 549 | |
| SQA000613 | 3D | 5629 | 7008 | 0 | 0 | 1380 | |
| SQA000614 | 5'UTR | 1 | 558 | 1 | 0 | 558 | |
| SQA000615 | CDS | 559 | 7011 | 0 | 0 | 6453 | |
| SQA000616 | VP4/2 | 559 | 993 | 0 | 0 | 435 | |
| SQA000617 | genome | 1 | 7056 | 1 | 0 | 7056 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA027705 | protease 3C | 1508 | 1690 | 0 | 0 | 183 | |
| SPA027706 | 3D | 1691 | 2146 | 0 | 0 | 456 | |
| SPA027707 | 3B (VPg) | 1487 | 1507 | 0 | 0 | 21 | |
| SPA027708 | 3A (P3-A) | 1410 | 1486 | 0 | 0 | 77 | |
| SPA027709 | 2C (P2-C) | 1088 | 1409 | 0 | 0 | 322 | |
| SPA027710 | 2B (P2-B) | 993 | 1087 | 0 | 0 | 95 | |
| SPA027711 | 2A (P2-A) | 851 | 992 | 0 | 0 | 142 | |
| SPA027712 | 1D (VP1) | 568 | 850 | 0 | 0 | 283 | |
| SPA027713 | 1C (VP3) | 331 | 567 | 0 | 0 | 237 | |
| SPA027714 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPA027715 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA027716 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA027717 | CDS | 1 | 2150 | 0 | 0 | 2150 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |