RVdb StrainID | ANC00184 | GenBank Accession | OM001355.1 |
Species | RVA | Sequence Length | 7110 nt |
Serotype | 61 Checked by RVdb | Serotype (GenBank) | 61 |
Definition | Rhinovirus A61 strain RvA61/USA/2021/2EX6MN, complete genome | GenBank Submission Date | 2022-01-13 |
Strain Name | RvA61/USA/2021/2EX6MN | Sampling Date | 2021 |
Sampling Country | USA | Sampling location | Seattle, Washington |
Isolation Source | -N/A- | NCBI Taxon ID | 185920 |
Sequencing Technology | -N/A- | Assembly Method | -N/A- |
SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
---|---|---|---|---|---|---|---|
SQA000555 | 1A (VP4) | 619 | 825 | 0 | 0 | 207 | |
SQA000556 | 1B (VP2) | 826 | 1608 | 0 | 0 | 783 | |
SQA000557 | 1C (VP3) | 1609 | 2322 | 0 | 0 | 714 | |
SQA000558 | 1D (VP1) | 2323 | 3198 | 0 | 0 | 876 | |
SQA000559 | 2A (P2-A) | 3199 | 3624 | 0 | 0 | 426 | |
SQA000560 | 2B (P2-B) | 3625 | 3909 | 0 | 0 | 285 | |
SQA000561 | 2C (P2-C) | 3910 | 4882 | 0 | 0 | 973 | |
SQA000562 | 3A (P3-A) | 4883 | 5106 | 0 | 0 | 224 | |
SQA000563 | 3B (VPg) | 5107 | 5169 | 0 | 0 | 63 | |
SQA000564 | protease 3C | 5170 | 5718 | 0 | 0 | 549 | |
SQA000565 | 3D | 5719 | 7098 | 0 | 0 | 1380 | |
SQA000566 | 5'UTR | 1 | 618 | 0 | 0 | 618 | |
SQA000567 | CDS | 619 | 7101 | 0 | 0 | 6483 | |
SQA000568 | VP4/2 | 619 | 1053 | 0 | 0 | 435 | |
SQA000569 | genome | 1 | 7110 | 0 | 1 | 7110 |
SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
---|---|---|---|---|---|---|---|
SPA026353 | protease 3C | 1518 | 1700 | 0 | 0 | 183 | |
SPA026354 | 3D | 1701 | 2160 | 0 | 0 | 460 | |
SPA026355 | 3B (VPg) | 1497 | 1517 | 0 | 0 | 21 | |
SPA026356 | 3A (P3-A) | 1420 | 1496 | 0 | 0 | 77 | |
SPA026357 | 2C (P2-C) | 1098 | 1419 | 0 | 0 | 322 | |
SPA026358 | 2B (P2-B) | 1003 | 1097 | 0 | 0 | 95 | |
SPA026359 | 2A (P2-A) | 861 | 1002 | 0 | 0 | 142 | |
SPA026360 | 1D (VP1) | 569 | 860 | 0 | 0 | 292 | |
SPA026361 | 1C (VP3) | 331 | 568 | 0 | 0 | 238 | |
SPA026362 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
SPA026363 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
SPA026364 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
SPA026365 | CDS | 1 | 2160 | 0 | 0 | 2160 |
PMID | Title | Publication Year | Journal | View in RVdb |
---|---|---|---|---|
35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |