| RVdb StrainID | ANC00109 | GenBank Accession | OM001449.1 |
| Species | RVA | Sequence Length | 7102 nt |
| Serotype | 28 Checked by RVdb | Serotype (GenBank) | 28 |
| Definition | Rhinovirus A28 strain RvA28/USA/2021/T5JCZV, complete genome | GenBank Submission Date | 2022-01-13 |
| Strain Name | RvA28/USA/2021/T5JCZV | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | Seattle, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 147672 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA000316 | 1A (VP4) | 582 | 788 | 0 | 0 | 207 | |
| SQA000317 | 1B (VP2) | 789 | 1577 | 0 | 0 | 789 | |
| SQA000318 | 1C (VP3) | 1578 | 2291 | 0 | 0 | 714 | |
| SQA000319 | 1D (VP1) | 2292 | 3164 | 0 | 0 | 873 | |
| SQA000320 | 2A (P2-A) | 3165 | 3593 | 0 | 0 | 429 | |
| SQA000321 | 2B (P2-B) | 3594 | 3878 | 0 | 0 | 285 | |
| SQA000322 | 2C (P2-C) | 3879 | 4841 | 0 | 0 | 963 | |
| SQA000323 | 3'UTR | 7068 | 7102 | 0 | 1 | 35 | |
| SQA000324 | 3A (P3-A) | 4842 | 5075 | 0 | 0 | 234 | |
| SQA000325 | 3B (VPg) | 5076 | 5138 | 0 | 0 | 63 | |
| SQA000326 | protease 3C | 5139 | 5687 | 0 | 0 | 549 | |
| SQA000327 | 3D | 5688 | 7064 | 0 | 0 | 1377 | |
| SQA000328 | 5'UTR | 1 | 581 | 1 | 0 | 581 | |
| SQA000329 | CDS | 582 | 7067 | 0 | 0 | 6486 | |
| SQA000330 | VP4/2 | 582 | 1016 | 0 | 0 | 435 | |
| SQA000331 | genome | 1 | 7102 | 1 | 1 | 7102 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA027328 | protease 3C | 1520 | 1702 | 0 | 0 | 183 | |
| SPA027329 | 3D | 1703 | 2161 | 0 | 0 | 459 | |
| SPA027330 | 3B (VPg) | 1499 | 1519 | 0 | 0 | 21 | |
| SPA027331 | 3A (P3-A) | 1421 | 1498 | 0 | 0 | 78 | |
| SPA027332 | 2C (P2-C) | 1100 | 1420 | 0 | 0 | 321 | |
| SPA027333 | 2B (P2-B) | 1005 | 1099 | 0 | 0 | 95 | |
| SPA027334 | 2A (P2-A) | 862 | 1004 | 0 | 0 | 143 | |
| SPA027335 | 1D (VP1) | 571 | 861 | 0 | 0 | 291 | |
| SPA027336 | 1C (VP3) | 333 | 570 | 0 | 0 | 238 | |
| SPA027337 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPA027338 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA027339 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA027340 | CDS | 1 | 2161 | 0 | 0 | 2161 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |