| RVdb StrainID | ANC00089 | GenBank Accession | ON311206.1 |
| Species | RVA | Sequence Length | 7106 nt |
| Serotype | 100 Checked by RVdb | Serotype (GenBank) | 100 |
| Definition | Rhinovirus A100 strain A100_2 polyprotein gene, complete cds | GenBank Submission Date | 2022-07-19 |
| Strain Name | A100_2 | Sampling Date | 2019-10-19 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 185946 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA000253 | 1A (VP4) | 583 | 789 | 0 | 0 | 207 | |
| SQA000254 | 1B (VP2) | 790 | 1584 | 0 | 0 | 795 | |
| SQA000255 | 1C (VP3) | 1585 | 2298 | 0 | 0 | 714 | |
| SQA000256 | 1D (VP1) | 2299 | 3162 | 0 | 0 | 864 | |
| SQA000257 | 2A (P2-A) | 3163 | 3588 | 0 | 0 | 426 | |
| SQA000258 | 2B (P2-B) | 3589 | 3873 | 0 | 0 | 285 | |
| SQA000259 | 2C (P2-C) | 3874 | 4839 | 0 | 0 | 966 | |
| SQA000260 | 3'UTR | 7066 | 7106 | 0 | 1 | 41 | |
| SQA000261 | 3A (P3-A) | 4840 | 5070 | 0 | 0 | 231 | |
| SQA000262 | 3B (VPg) | 5071 | 5133 | 0 | 0 | 63 | |
| SQA000263 | protease 3C | 5134 | 5682 | 0 | 0 | 549 | |
| SQA000264 | 3D | 5683 | 7062 | 0 | 0 | 1380 | |
| SQA000265 | 5'UTR | 1 | 582 | 1 | 0 | 582 | |
| SQA000266 | CDS | 583 | 7065 | 0 | 0 | 6483 | |
| SQA000267 | VP4/2 | 583 | 1017 | 0 | 0 | 435 | |
| SQA000268 | genome | 1 | 7106 | 1 | 1 | 7106 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA029475 | protease 3C | 1518 | 1700 | 0 | 0 | 183 | |
| SPA029476 | 3D | 1701 | 2148 | 0 | 0 | 448 | |
| SPA029477 | 3B (VPg) | 1497 | 1517 | 0 | 0 | 21 | |
| SPA029478 | 3A (P3-A) | 1420 | 1496 | 0 | 0 | 77 | |
| SPA029479 | 2C (P2-C) | 1098 | 1419 | 0 | 0 | 322 | |
| SPA029480 | 2B (P2-B) | 1003 | 1097 | 0 | 0 | 95 | |
| SPA029481 | 2A (P2-A) | 861 | 1002 | 0 | 0 | 142 | |
| SPA029482 | 1D (VP1) | 573 | 860 | 0 | 0 | 288 | |
| SPA029483 | 1C (VP3) | 335 | 572 | 0 | 0 | 238 | |
| SPA029484 | 1B (VP2) | 70 | 334 | 0 | 0 | 265 | |
| SPA029485 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA029486 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA029487 | CDS | 1 | 2160 | 0 | 0 | 2160 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |