| RVdb StrainID | ANC00039 | GenBank Accession | ON311256.1 |
| Species | RVA | Sequence Length | 6340 nt |
| Serotype | 20 Checked by RVdb | Serotype (GenBank) | 20 |
| Definition | Rhinovirus A20 strain A20_1 polyprotein gene, partial cds | GenBank Submission Date | 2022-07-19 |
| Strain Name | A20_1 | Sampling Date | 2019-12-17 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 147675 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA000098 | 1A (VP4) | 472 | 678 | 0 | 0 | 207 | |
| SQA000099 | 1B (VP2) | 679 | 1464 | 0 | 0 | 786 | |
| SQA000100 | 1C (VP3) | 1465 | 2178 | 0 | 0 | 714 | |
| SQA000101 | 1D (VP1) | 2179 | 3069 | 0 | 0 | 891 | |
| SQA000102 | 2A (P2-A) | 3070 | 3498 | 0 | 0 | 429 | |
| SQA000103 | 2B (P2-B) | 3499 | 3783 | 0 | 0 | 285 | |
| SQA000104 | 2C (P2-C) | 3784 | 4746 | 0 | 0 | 963 | |
| SQA000105 | 3A (P3-A) | 4747 | 4980 | 0 | 0 | 234 | |
| SQA000106 | 3B (VPg) | 4981 | 5043 | 0 | 0 | 63 | |
| SQA000107 | protease 3C | 5044 | 5589 | 0 | 0 | 546 | |
| SQA000108 | 3D | 5590 | 6340 | 0 | 1 | 751 | |
| SQA000109 | 5'UTR | 1 | 471 | 1 | 0 | 471 | |
| SQA000110 | CDS | 472 | 6340 | 0 | 1 | 5869 | |
| SQA000111 | VP4/2 | 472 | 906 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA030123 | protease 3C | 1525 | 1707 | 0 | 0 | 183 | |
| SPA030124 | 3B (VPg) | 1504 | 1524 | 0 | 0 | 21 | |
| SPA030125 | 3A (P3-A) | 1426 | 1503 | 0 | 0 | 78 | |
| SPA030126 | 2C (P2-C) | 1105 | 1425 | 0 | 0 | 321 | |
| SPA030127 | 2B (P2-B) | 1010 | 1104 | 0 | 0 | 95 | |
| SPA030128 | 2A (P2-A) | 867 | 1009 | 0 | 0 | 143 | |
| SPA030129 | 1D (VP1) | 570 | 866 | 0 | 0 | 297 | |
| SPA030130 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA030131 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA030132 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA030133 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA030134 | CDS | 1 | 1956 | 0 | 0 | 1956 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |