| RVdb StrainID | ANC00034 | GenBank Accession | ON311261.1 |
| Species | RVA | Sequence Length | 7072 nt |
| Serotype | 11 Checked by RVdb | Serotype (GenBank) | 11 |
| Definition | Rhinovirus A11 strain A11_3 polyprotein gene, complete cds | GenBank Submission Date | 2022-07-19 |
| Strain Name | A11_3 | Sampling Date | 2020-11-13 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 39767 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA000082 | 1A (VP4) | 586 | 792 | 0 | 0 | 207 | |
| SQA000083 | 1B (VP2) | 793 | 1572 | 0 | 0 | 780 | |
| SQA000084 | 1C (VP3) | 1573 | 2286 | 0 | 0 | 714 | |
| SQA000085 | 1D (VP1) | 2287 | 3144 | 0 | 0 | 858 | |
| SQA000086 | 2A (P2-A) | 3145 | 3570 | 0 | 0 | 426 | |
| SQA000087 | 2B (P2-B) | 3571 | 3855 | 0 | 0 | 285 | |
| SQA000088 | 2C (P2-C) | 3856 | 4821 | 0 | 0 | 966 | |
| SQA000089 | 3'UTR | 7048 | 7072 | 0 | 1 | 25 | |
| SQA000090 | 3A (P3-A) | 4822 | 5052 | 0 | 0 | 231 | |
| SQA000091 | 3B (VPg) | 5053 | 5115 | 0 | 0 | 63 | |
| SQA000092 | protease 3C | 5116 | 5664 | 0 | 0 | 549 | |
| SQA000093 | 3D | 5665 | 7044 | 0 | 0 | 1380 | |
| SQA000094 | 5'UTR | 1 | 585 | 1 | 0 | 585 | |
| SQA000095 | CDS | 586 | 7047 | 0 | 0 | 6462 | |
| SQA000096 | VP4/2 | 586 | 1020 | 0 | 0 | 435 | |
| SQA000097 | genome | 1 | 7072 | 1 | 1 | 7072 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA030187 | protease 3C | 1511 | 1693 | 0 | 0 | 183 | |
| SPA030188 | 3D | 1694 | 2149 | 0 | 0 | 456 | |
| SPA030189 | 3B (VPg) | 1490 | 1510 | 0 | 0 | 21 | |
| SPA030190 | 3A (P3-A) | 1413 | 1489 | 0 | 0 | 77 | |
| SPA030191 | 2C (P2-C) | 1091 | 1412 | 0 | 0 | 322 | |
| SPA030192 | 2B (P2-B) | 996 | 1090 | 0 | 0 | 95 | |
| SPA030193 | 2A (P2-A) | 854 | 995 | 0 | 0 | 142 | |
| SPA030194 | 1D (VP1) | 568 | 853 | 0 | 0 | 286 | |
| SPA030195 | 1C (VP3) | 330 | 567 | 0 | 0 | 238 | |
| SPA030196 | 1B (VP2) | 70 | 329 | 0 | 0 | 260 | |
| SPA030197 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA030198 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA030199 | CDS | 1 | 2153 | 0 | 0 | 2153 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |