| RVdb StrainID | ANC00019 | GenBank Accession | ON729329.1 |
| Species | RVA | Sequence Length | 7076 nt |
| Serotype | 60 Checked by RVdb | Serotype (GenBank) | 60 |
| Definition | Rhinovirus A60 strain SC42, complete genome | GenBank Submission Date | 2022-07-20 |
| Strain Name | SC42 | Sampling Date | 2017 |
| Sampling Country | USA | Sampling location | Seattle, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 185919 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA000035 | 1A (VP4) | 571 | 777 | 0 | 0 | 207 | |
| SQA000036 | 1B (VP2) | 778 | 1563 | 0 | 0 | 786 | |
| SQA000037 | 1C (VP3) | 1564 | 2277 | 0 | 0 | 714 | |
| SQA000038 | 1D (VP1) | 2278 | 3147 | 0 | 0 | 870 | |
| SQA000039 | 2A (P2-A) | 3148 | 3573 | 0 | 0 | 426 | |
| SQA000040 | 2B (P2-B) | 3574 | 3858 | 0 | 0 | 285 | |
| SQA000041 | 2C (P2-C) | 3859 | 4824 | 0 | 0 | 966 | |
| SQA000042 | 3A (P3-A) | 4825 | 5055 | 0 | 0 | 231 | |
| SQA000043 | 3B (VPg) | 5056 | 5118 | 0 | 0 | 63 | |
| SQA000044 | protease 3C | 5119 | 5667 | 0 | 0 | 549 | |
| SQA000045 | 3D | 5668 | 7047 | 0 | 0 | 1380 | |
| SQA000046 | 5'UTR | 1 | 570 | 1 | 0 | 570 | |
| SQA000047 | CDS | 571 | 7050 | 0 | 0 | 6480 | |
| SQA000048 | VP4/2 | 571 | 1005 | 0 | 0 | 435 | |
| SQA000049 | genome | 1 | 7076 | 1 | 1 | 7076 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA030382 | protease 3C | 1517 | 1699 | 0 | 0 | 183 | |
| SPA030383 | 3D | 1700 | 2159 | 0 | 0 | 460 | |
| SPA030384 | 3B (VPg) | 1496 | 1516 | 0 | 0 | 21 | |
| SPA030385 | 3A (P3-A) | 1419 | 1495 | 0 | 0 | 77 | |
| SPA030386 | 2C (P2-C) | 1097 | 1418 | 0 | 0 | 322 | |
| SPA030387 | 2B (P2-B) | 1002 | 1096 | 0 | 0 | 95 | |
| SPA030388 | 2A (P2-A) | 860 | 1001 | 0 | 0 | 142 | |
| SPA030389 | 1D (VP1) | 570 | 859 | 0 | 0 | 290 | |
| SPA030390 | 1C (VP3) | 335 | 569 | 0 | 0 | 235 | |
| SPA030391 | 1B (VP2) | 70 | 334 | 0 | 0 | 265 | |
| SPA030392 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA030393 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA030394 | CDS | 1 | 2159 | 0 | 0 | 2159 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |