RVdb StrainID | ANC00014 | GenBank Accession | ON729334.1 |
Species | RVA | Sequence Length | 7124 nt |
Serotype | 85 Checked by RVdb | Serotype (GenBank) | 85 |
Definition | Rhinovirus A85 strain SC380, complete genome | GenBank Submission Date | 2022-07-20 |
Strain Name | SC380 | Sampling Date | 2017 |
Sampling Country | USA | Sampling location | Seattle, Washington |
Isolation Source | -N/A- | NCBI Taxon ID | 185937 |
Sequencing Technology | -N/A- | Assembly Method | -N/A- |
SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
---|---|---|---|---|---|---|---|
SQA000019 | 1A (VP4) | 611 | 817 | 0 | 0 | 207 | |
SQA000020 | 1B (VP2) | 818 | 1615 | 0 | 0 | 798 | |
SQA000021 | 1C (VP3) | 1616 | 2329 | 0 | 0 | 714 | |
SQA000022 | 1D (VP1) | 2330 | 3187 | 0 | 0 | 858 | |
SQA000023 | 2A (P2-A) | 3188 | 3613 | 0 | 0 | 426 | |
SQA000024 | 2B (P2-B) | 3614 | 3898 | 0 | 0 | 285 | |
SQA000025 | 2C (P2-C) | 3899 | 4864 | 0 | 0 | 966 | |
SQA000026 | 3'UTR | 7091 | 7124 | 0 | 1 | 34 | |
SQA000027 | 3A (P3-A) | 4865 | 5095 | 0 | 0 | 231 | |
SQA000028 | 3B (VPg) | 5096 | 5158 | 0 | 0 | 63 | |
SQA000029 | protease 3C | 5159 | 5707 | 0 | 0 | 549 | |
SQA000030 | 3D | 5708 | 7087 | 0 | 0 | 1380 | |
SQA000031 | 5'UTR | 1 | 610 | 0 | 0 | 610 | |
SQA000032 | CDS | 611 | 7090 | 0 | 0 | 6480 | |
SQA000033 | VP4/2 | 611 | 1046 | 0 | 0 | 436 | |
SQA000034 | genome | 1 | 7124 | 0 | 1 | 7124 |
SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
---|---|---|---|---|---|---|---|
SPA030447 | protease 3C | 1517 | 1699 | 0 | 0 | 183 | |
SPA030448 | 3D | 1700 | 2147 | 0 | 0 | 448 | |
SPA030449 | 3B (VPg) | 1496 | 1516 | 0 | 0 | 21 | |
SPA030450 | 3A (P3-A) | 1419 | 1495 | 0 | 0 | 77 | |
SPA030451 | 2C (P2-C) | 1097 | 1418 | 0 | 0 | 322 | |
SPA030452 | 2B (P2-B) | 1002 | 1096 | 0 | 0 | 95 | |
SPA030453 | 2A (P2-A) | 860 | 1001 | 0 | 0 | 142 | |
SPA030454 | 1D (VP1) | 574 | 859 | 0 | 0 | 286 | |
SPA030455 | 1C (VP3) | 336 | 573 | 0 | 0 | 238 | |
SPA030456 | 1B (VP2) | 70 | 335 | 0 | 0 | 266 | |
SPA030457 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
SPA030458 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
SPA030459 | CDS | 1 | 2159 | 0 | 0 | 2159 |
PMID | Title | Publication Year | Journal | View in RVdb |
---|---|---|---|---|
35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |