RVdb StrainID ANC00014 GenBank Accession ON729334.1
Species RVA Sequence Length 7124 nt
Serotype 85  Checked by RVdb Serotype (GenBank) 85
Definition Rhinovirus A85 strain SC380, complete genome GenBank Submission Date 2022-07-20
Strain Name SC380 Sampling Date 2017
Sampling Country USA Sampling location Seattle, Washington
Isolation Source -N/A- NCBI Taxon ID 185937
Sequencing Technology -N/A- Assembly Method -N/A-

Download selected NT sequences
SeqID Gene Name Start End StartTruncated EndTruncated Length
SQA000019 1A (VP4) 611 817 0 0 207
SQA000020 1B (VP2) 818 1615 0 0 798
SQA000021 1C (VP3) 1616 2329 0 0 714
SQA000022 1D (VP1) 2330 3187 0 0 858
SQA000023 2A (P2-A) 3188 3613 0 0 426
SQA000024 2B (P2-B) 3614 3898 0 0 285
SQA000025 2C (P2-C) 3899 4864 0 0 966
SQA000026 3'UTR 7091 7124 0 1 34
SQA000027 3A (P3-A) 4865 5095 0 0 231
SQA000028 3B (VPg) 5096 5158 0 0 63
SQA000029 protease 3C 5159 5707 0 0 549
SQA000030 3D 5708 7087 0 0 1380
SQA000031 5'UTR 1 610 0 0 610
SQA000032 CDS 611 7090 0 0 6480
SQA000033 VP4/2 611 1046 0 0 436
SQA000034 genome 1 7124 0 1 7124
Download selected AA sequences
SeqID Gene Name Start End StartTruncated EndTruncated Length
SPA030447 protease 3C 1517 1699 0 0 183
SPA030448 3D 1700 2147 0 0 448
SPA030449 3B (VPg) 1496 1516 0 0 21
SPA030450 3A (P3-A) 1419 1495 0 0 77
SPA030451 2C (P2-C) 1097 1418 0 0 322
SPA030452 2B (P2-B) 1002 1096 0 0 95
SPA030453 2A (P2-A) 860 1001 0 0 142
SPA030454 1D (VP1) 574 859 0 0 286
SPA030455 1C (VP3) 336 573 0 0 238
SPA030456 1B (VP2) 70 335 0 0 266
SPA030457 1A (VP4) 1 69 0 0 69
SPA030458 VP4/2 1 145 0 0 145
SPA030459 CDS 1 2159 0 0 2159
PMID Title Publication Year Journal View in RVdb
35749582 The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. 2022 J Infect Dis View More