Title Polymerase chain reaction and sequencing for typing rhinovirus RNA.
Author Mori, J; Clewley, J P
Journal J Med Virol Publication Year/Month 1994-Dec
PMID 7897363 PMCID PMC7166759
Affiliation 1.Virus Reference Division, Central Public Health Laboratory, London, United Kingdom.

Primers were designed and tested for their ability to distinguish rhinoviruses from enteroviruses. A primer set derived from the 5\'-UTR/VP coding region junction was able to amplify all the rhinovirus serotypes tested. Enteroviruses were either not amplified by these primer pairs or produced a band of larger size that could easily be discriminated from the rhinovirus-specific product. In contrast, primers embedded in the 5\'-UTR region alone were able to amplify both rhinovirus and enterovirus RNA. It is shown that rhinoviruses could be specifically typed by sequencing the amplicon derived from the 5\'-UTR set. The sequences of the 5\'-UTR region of ten previously unsequenced rhinoviruses were derived. The sequences obtained cluster into two groups: 1B, 41, 15, 30, 63, 31, 56, and 44; and 17, 69, and 70. Amplicons from serotypes 17,69, and 70 also group by sequence with the equivalent region of HRV14 from the genetic database, while the others group with 2 and 89.

StrainID RV Species Serotype Length(nt) Country Year Strain Name
UNS07193 Unclassified None 254 None 1734
UNS07194 Unclassified None 255 None 33342
UNS07195 Unclassified None 259 None B632
UNS07196 Unclassified None 255 None 106F
UNS07197 Unclassified None 255 None 140F
UNS07198 Unclassified None 257 None 56110
UNS07199 Unclassified None 254 None 71560
UNS07200 Unclassified None 255 None CH82
UNS07201 Unclassified None 259 None 6360-CV 41
UNS07202 Unclassified None 257 None F02-2513-Mitchinson
UNS07203 Unclassified None 249 None F02-2547-Treganza
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