Title Molecular relationships between 21 human rhinovirus serotypes.
Author Horsnell, C; Gama, R E; Hughes, P J; Stanway, G
Journal J Gen Virol Publication Year/Month 1995-Oct
PMID 7595358 PMCID -N/A-
Affiliation 1.Department of Biology, University of Essex, Colchester, UK.

We have analysed, by PCR using consensus primers followed by sequencing, 12 human rhinoviruses (HRVs) in a genomic region including that corresponding to the immunogenic site NIm-II. Together with published information, 21 sequences are available for comparison. In the region analysed, which encodes 112 amino acids, the majority (18) of the serotypes exhibited at least 70% amino acid identity to one another and some serotypes are very closely related. These include HRV-36, -58 and -89, known to exhibit antigenic cross reactivity, which were shown to differ at only three amino acid positions. Three serotypes, HRV-3, -14 and -72, share at least 84% identity with one another but are less than 66% identical to the majority group. Interestingly, membership of these two molecular clusters correlates with the groupings determined by sensitivity to antivirus drugs, suggesting that they reflect a fundamental division of HRVs. In contrast, there is no correlation with receptor grouping, since the majority group contains members belonging to both HRV receptor groups.

StrainID RV Species Serotype Length(nt) Country Year Strain Name
ANZ00001 A 11 331 None serotype 36
UNS07204 Unclassified None 336 None serotype 7
UNS07205 Unclassified None 327 None serotype 11
UNS07206 Unclassified None 336 None serotype 21
UNS07207 Unclassified None 333 None serotype 29
UNS07208 Unclassified None 336 None serotype 49
UNS07209 Unclassified None 336 None serotype 50
UNS07210 Unclassified None 336 None serotype 58
UNS07211 Unclassified None 336 None serotype 62
UNS07212 Unclassified None 336 None serotype 65
UNS07213 Unclassified None 327 None serotype 3
UNS07214 Unclassified None 327 None serotype 72
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