Title Pre-existing cross-reactive neutralizing activity against SARS-CoV-2 and seasonal coronaviruses prior to the COVID-19 pandemic (2014-2019) with limited immunity against recent emerging SARS-CoV-2 variants, Vietnam.
Author Nguyen, Thi Thanh Ngan; Choo, Ee Mei; Nakamura, Yukio; Suzuki, Ryuji; Shiina, Takashi; Shin-I, Tadasu; Fukuta, Mizuki; Nguyen, Co Thach; Nguyen, Thi Thu Thuy; Nguyen, Le Khanh Hang; Hoang, Vu Mai Phuong; Morita, Kouichi; Dang, Duc Anh; Hasebe, Futoshi; Le, Thi Quynh Mai; Moi, Meng Ling
Journal Int J Infect Dis Publication Year/Month 2023-Nov
PMID 37984763 PMCID -N/A-
Affiliation + expend 1.World Health Organization Collaborating Center for Reference and Research on Tropical and Emerging Virus Diseases, Institute of Tropical Medicine, Nagasaki University, Nagasaki, Japan (TTNN, EMC, MF, KM, FH), Sakamoto 1-12-4, Nagasaki 852-8523, Japan (YN, RS); Repertoire Genesis Inc., Ibaraki, Japan (TS); Graduate School of Medicine, Tokai University (ST); National Institute of Hygiene and Epidemiology, Hanoi, Vietnam (CTN, TTTN, LKHN, TTL, VMPH, DAD, TQML).

OBJECTIVE: SARS-CoV-2 transmission and epidemic potential is related to the population\' immunity levels. As such, assessing different regions\' preexisting immune response to SARS-CoV-2 is important to understand the transmission potential of emerging SARS-CoV-2 variants. DESIGN: In 975 serum samples from Vietnam (2014 to 2019), anti-SARS-CoV-2 IgG levels were determined by ELISA. Plaque reduction neutralization test (PRNT) was performed using Wuhan strain and variants of concern (VOCs). Cross-reactivity was confirmed by analyzing B-cell receptor (BCR) repertoire sequences and identifying BCR repertoire sequences-derived T-cell epitopes. RESULTS: Overall, 20.9% (n=76/364) and 9.2% (n=7) demonstrated SARS-CoV-2 neutralizing activity (PRNT(50)) against the Wuhan and alpha strain, respectively. Neutralizing activity against beta, gamma, and delta strains was absent (PRNT(50)<5) in all samples. Cross-reactive epitopes against SARS-CoV-2 and other coronaviruses spike proteins were detected in the N-terminal domain (NTD), S2, and RBD regions. CONCLUSION: Following BCR and major histocompatibility complex analysis, TCR-recognized epitope motif (TREM) among pathogenic coronaviruses and coronaviruses spike proteins were the top TREM peptide, suggesting that pre-existing immunity against SARS-CoV-2 in Vietnam was due to exposure to common cold coronaviruses. With limited immunity against emerging VOCs, further monitoring and control of the epidemic, along with COVID-19 vaccine programs against VOCs, are necessary.

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