Title Establishment of RT-RPA-Cas12a assay for rapid and sensitive detection of human rhinovirus B.
Author Li, Yongdong; Wang, Xuefei; Xu, Rong; Wang, Ting; Zhang, Dandan; Qian, Weidong
Journal BMC Microbiol Publication Year/Month 2023-Nov
PMID 37951882 PMCID PMC10640725
Affiliation + expend 1.Ningbo Key Laboratory of Virus Research, Ningbo Municipal Center for Disease Control and Prevention, Ningbo, 315010, P. R. China.

Human rhinovirus B (HRV-B) is a major human viral pathogen that can be responsible for various kinds of infections. Due to the health risks associated with HRV-B, it is therefore crucial to explore a rapid, specific, and sensitive method for surveillance. Herein, we exploited a novel detection method for HRV-B by combining reverse-transcription recombinase polymerase amplification (RT-RPA) of nucleic acids isothermal amplification and the trans-cleavage activity of Cas12a. Our RT-RPA-Cas12a-based fluorescent assay can be completed within 35-45 min and obtain a lower detection threshold to 0.5 copies/microL of target RNA. Meanwhile, crRNA sequences without a specific protospacer adjacent motif can effectively activate the trans-cleavage activity of Cas12a. Moreover, our RT-RPA-Cas12a-based fluorescent method was examined using 30 clinical samples, and exhibited high accuracy with positive and negative predictive agreement of 90% and 100%, respectively. Taken together, a novel promising, rapid and effective RT-RPA-Cas12a-based detection method was explored and shows promising potential for on-site HRV-B infection in resource-limited settings.

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    National Institute of Pathogen Biology, CAMS & PUMC, Bejing, China
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