Title Identification of two proposed novel human rhinovirus types: Bpat107 and Cpat58.
Author Zhang, Qiang; Xie, Zhibo; Xia, Baicheng; Wang, Yage; Xu, Wenbo; Zhang, Yan
Journal J Med Virol Publication Year/Month 2023-Feb
PMID 36698256 PMCID -N/A-
Affiliation + expend 1.NHC Key Laboratory of Medical Virology and Viral Diseases, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China.

Human rhinovirus (RV) is an important viral pathogen associated with severe acute respiratory tract infection. The present study retrospectively identified RV types in hospitalized patients with severe acute respiratory infection (SARI) from October 2017 to June 2019 in Henan Province, China. Real-time PCR was used to screen pharyngeal swab samples for RV. Then, the VP1 gene sequences of RV-positive samples were amplified and sequenced with nested primer PCR; subsequently, analyses of the molecular epidemiology and genetic diversity characteristics of the RV types were performed. Seventy-three out of 1015 respiratory samples were identified as RV-positive, from which 65 complete VP1 sequences were successfully sequenced. These RVs were classified into 41 different types, including 26 RV-A types, 2 RV-B types, and 13 RV-C types. The RVs showed an obvious seasonal distribution, with peaks in summer and autumn. The epidemic peak of RV-C was later than that of RV-A. In addition, two new types of species, B and C, were proposed, Bpat107 and Cpat58, respectively. Compared with other types in the same RV species, the pairwise nucleotide p-distances of the two novel RV types were 0.262~0.402 and 0.251~0.508, respectively. This study analyzed the seasonal and genetic characteristics of RV associated with SARI cases in Henan Province, China. Two novel RV types were proposed.

StrainID RV Species Serotype Length(nt) Country Year Strain Name
ANS10147 A 82 867 China 2017 SA20170177
ANS10148 A 80 876 China 2017 SA20170191
ANS10149 A 101 867 China 2017 SA20170192
ANS10150 A 53 876 China 2017 SA20170318
ANS10151 A 22 867 China 2018 SA20180022
ANS10152 A 94 867 China 2018 SA20180035
ANS10153 A 32 867 China 2018 SA20180149
ANS10154 A 66 864 China 2018 SA20180185
ANS10155 A 66 864 China 2018 SA20180186
ANS10156 A 46 879 China 2018 SA20180187
ANS10157 A 108 879 China 2018 SA20180192
ANS10158 A 81 855 China 2018 SA20180221
ANS10159 A 104 855 China 2018 SA20180226
ANS10160 A 15 870 China 2018 SA20180228
ANS10161 A 104 855 China 2018 SA20180231
ANS10162 A 101 867 China 2018 SA20180236
ANS10163 A 82 867 China 2018 SA20180237
ANS10164 A 63 858 China 2018 SA20180242
ANS10165 A 104 855 China 2018 SA20180245
ANS10166 A 104 855 China 2018 SA20180251
ANS10167 A 43 867 China 2018 SA20180280
ANS10168 A 54 858 China 2018 SA20180281
ANS10169 A 15 870 China 2018 SA20180292
ANS10170 A 101 867 China 2018 SA20180295
ANS10171 A 104 855 China 2018 SA20180305
ANS10172 A 101 867 China 2018 SA20180306
ANS10173 A 104 855 China 2018 SA20180339
ANS10174 A 41 873 China 2018 SA20180343
ANS10175 A 47 858 China 2018 SA20180389
ANS10176 A 8 852 China 2018 SA20180419
ANS10177 A 33 858 China 2019 SA20190059
ANS10178 A 29 843 China 2019 SA20190127
ANS10179 A 8 852 China 2019 SA20190156
ANS10180 A 21 861 China 2019 SA20190189
ANS10181 A 15 870 China 2019 SA20190201
ANS10182 A 21 861 China 2019 SA20190229
ANS10183 A 47 858 China 2019 SA20190237
ANS10184 A 82 867 China 2019 SA20190270
ANS10185 A 75 867 China 2019 SA20190271
ANS10186 A 56 858 China 2019 SA20190316
ANS10187 A 80 876 China 2019 SA20190327
ANS10188 A 56 858 China 2019 SA20190329
ANS10189 A 78 861 China 2019 SA20190335
ANS10190 A 12 861 China 2019 SA20190338
ANS10191 A 78 861 China 2019 SA20190348
ANS10192 A 12 861 China 2019 SA20190352
BNS02018 B 14 867 China 2017 SA20170325
BNS02019 B 107 861 China 2018 SA20180314
CNS07312 C 15 828 China 2017 SA20170187
CNS07313 C 54 834 China 2017 SA20170210
CNS07314 C 54 834 China 2017 SA20170214
CNS07315 C 36 816 China 2017 SA20170269
CNS07316 C 36 816 China 2018 SA20180108
CNS07317 C 3 825 China 2018 SA20180182
CNS07318 C 5 825 China 2018 SA20180188
CNS07319 C 8 822 China 2018 SA20180304
CNS07320 C 2 813 China 2018 SA20180310
CNS07321 C 31 822 China 2018 SA20180334
CNS07322 C 58 822 China 2018 SA20180357
CNS07323 C 2 813 China 2018 SA20180367
CNS07324 C 27 813 China 2018 SA20180368
CNS07325 C 41 816 China 2018 SA20180381
CNS07326 C 2 813 China 2018 SA20180384
CNS07327 C 9 834 China 2019 SA20190159
CNS07328 C 19 834 China 2019 SA20190309
  • Copyright © 2023
    National Institute of Pathogen Biology, CAMS & PUMC, Bejing, China
    All rights reserved.