OBJECTIVES: This study aimed to compare the effectiveness of paced breathing (PB) versus su-soku practice (spontaneous breathing with counting numbers) on autonomic function and brain activity and examine the associations between personality traits, brain activity, and autonomic function. DESIGN: A three-way crossover study design. SETTING: Thirty healthy Korean participants (15 men: 28.5 +/- 4.7 years; 15 women: 27.7 +/- 4.8 years) were asked to answer the Korean version of the 125-Temperament and Character Inventory (TCI). Three-way crossover design included normal PB (0.25 Hz), slow PB (0.1 Hz), and su-soku practice. Participants were randomly assigned to one of three groups (group A: su-soku/normal PB/slow PB; group B: normal PB/slow PB/su-soku; group C: slow PB/su-soku/normal PB). MAIN OUTCOME MEASURES: The Korean version of the 125-TCI scores, electroencephalography (EEG), heart rate variability (HRV), and respiratory curve data. RESULTS: EEG parameters between normal PB, slow PB, and su-soku showed no significant differences. High frequency and approximate entropy during normal PB and su-soku were higher than those during slow PB. Alpha band power related to well-focused alertness had strong negative correlations with the standard deviation of R-R intervals and square root of the mean of the sum of the squares of differences between adjacent R-R intervals during su-soku practice, while theta band power related to drowsiness had strong positive correlations with very low-frequency power during normal PB. Reflective and analytical individuals tended to be highly focused and alert during su-soku and normal PB, while anxious and unwilling individuals tended to focus on counting in and be drowsier during normal PB. CONCLUSIONS: This study\'s findings suggest that the association between brain activity and autonomic function is affected by meditation type and personality traits.