Title Risk factors and patterns of household clusters of respiratory viruses in rural Nepal.
Author Scott, E M; Magaret, A; Kuypers, J; Tielsch, J M; Katz, J; Khatry, S K; Stewart, L; Shrestha, L; LeClerq, S C; Englund, J A; Chu, H Y
Journal Epidemiol Infect Publication Year/Month 2019-Oct
PMID 31607271 PMCID PMC6805793
Affiliation + expend 1.School of Medicine, University of Washington, Seattle, WA, USA.

Viral pneumonia is an important cause of death and morbidity among infants worldwide. Transmission of non-influenza respiratory viruses in households can inform preventative interventions and has not been well-characterised in South Asia. From April 2011 to April 2012, household members of pregnant women enrolled in a randomised trial of influenza vaccine in rural Nepal were surveyed weekly for respiratory illness until 180 days after birth. Nasal swabs were tested by polymerase chain reaction for respiratory viruses in symptomatic individuals. A transmission event was defined as a secondary case of the same virus within 14 days of initial infection within a household. From 555 households, 825 initial viral illness episodes occurred, resulting in 79 transmission events. The overall incidence of transmission was 1.14 events per 100 person-weeks. Risk of transmission incidence was associated with an index case age 1-4 years (incidence rate ratio (IRR) 2.35; 95% confidence interval (CI) 1.40-3.96), coinfection as initial infection (IRR 1.94; 95% CI 1.05-3.61) and no electricity in household (IRR 2.70; 95% CI 1.41-5.00). Preventive interventions targeting preschool-age children in households in resource-limited settings may decrease the risk of transmission to vulnerable household members, such as young infants.

StrainID RV Species Serotype Length(nt) Country Year Strain Name
CNM02320 C None 289 Nepal 2012 HRVC/Nepal/HH10/1/12_2012
CNM02325 C None 214 Nepal 2011 HRVC/Nepal/HH22/3/12_2011
CNP02322 C None 287 Nepal 2012 HRVC/Nepal/HH2/4/1_2012
CNP02327 C None 206 Nepal 2011 HRVC/Nepal/HH8/1/11_2011
CNS02323 C None 243 Nepal 2012 HRVC/Nepal/HH18/2/2_2012
CNS02328 C None 205 Nepal 2011 HRVC/Nepal/HH6/1/5_2011
CNZ02321 C None 287 Nepal 2012 HRVC/Nepal/HH25/2/1_2012
CNZ02326 C None 212 Nepal 2012 HRVC/Nepal/HH18/1/2_2012
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