Title | Conformational flexibility in the enterovirus RNA replication platform. | ||
Author | Warden, Meghan S; Cai, Kai; Cornilescu, Gabriel; Burke, Jordan E; Ponniah, Komala; Butcher, Samuel E; Pascal, Steven M | ||
Journal | RNA | Publication Year/Month | 2019-Mar |
PMID | 30578285 | PMCID | PMC6380274 |
Affiliation + expend | 1.Department of Chemistry and Biochemistry, Old Dominion University, Norfolk, Virginia 23529, USA. |
A presumed RNA cloverleaf (5\'CL), located at the 5\'-most end of the noncoding region of the enterovirus genome, is the primary established site for initiation of genomic replication. Stem-loop B (SLB) and stem-loop D (SLD), the two largest stem-loops within the 5\'CL, serve as recognition sites for protein interactions that are essential for replication. Here we present the solution structure of rhinovirus serotype 14 5\'CL using a combination of nuclear magnetic resonance spectroscopy and small-angle X-ray scattering. In the absence of magnesium, the structure adopts an open, somewhat extended conformation. In the presence of magnesium, the structure compacts, bringing SLB and SLD into close contact, a geometry that creates an extensive accessible major groove surface, and permits interaction between the proteins that target each stem-loop.