Title | The complete nucleotide sequence of coxsackievirus A21. | ||
Author | Hughes, P J; North, C; Minor, P D; Stanway, G | ||
Journal | J Gen Virol | Publication Year/Month | 1989-Nov |
PMID | 2584950 | PMCID | -N/A- |
Affiliation | 1.Department of Biology, University of Essex, Wivenhoe Park, Colchester, U.K. |
We have determined the complete nucleotide sequence of coxsackievirus A21 (CAV-21), the first member of this enterovirus subgroup to be analysed in molecular detail. The sequence, which is 7401 nucleotides long, encodes an open reading frame of 2206 codons, preceded by a 5\' non-coding region of 711 nucleotides and followed by a 3\' non-coding region of 72 nucleotides plus a poly(A) tract. The most striking feature is the remarkable homology to the poliovirus (greater than 90% at the amino acid level) in the 3\' part of the genome. The rest of the genome is much less homologous, suggesting that CAV-21 is a recombinant virus. Rhinovirus-like characteristics, including the length of the 5\' non-coding region and a slight --U/--A imbalance in codon usage, may be related to the fact that CAV-21, like rhinoviruses, infects the upper respiratory tract. However, the sequence sheds little light on the molecular basis of the shared receptor specificity.