Title | Solution structure of the 2A protease from a common cold agent, human rhinovirus C2, strain W12. | ||
Author | Lee, Woonghee; Watters, Kelly E; Troupis, Andrew T; Reinen, Nichole M; Suchy, Fabian P; Moyer, Kylie L; Frederick, Ronnie O; Tonelli, Marco; Aceti, David J; Palmenberg, Ann C; Markley, John L | ||
Journal | PLoS One | Publication Year/Month | 2014 |
PMID | 24937088 | PMCID | PMC4061012 |
Affiliation + expend | 1.National Magnetic Resonance Facility at Madison, Biochemistry Department, University of Wisconsin-Madison, Madison, Wisconsin, United States of America. |
Human rhinovirus strains differ greatly in their virulence, and this has been correlated with the differing substrate specificity of the respective 2A protease (2Apro). Rhinoviruses use their 2Apro to cleave a spectrum of cellular proteins important to virus replication and anti-host activities. These enzymes share a chymotrypsin-like fold stabilized by a tetra-coordinated zinc ion. The catalytic triad consists of conserved Cys (C105), His (H34), and Asp (D18) residues. We used a semi-automated NMR protocol developed at NMRFAM to determine the solution structure of 2Apro (C105A variant) from an isolate of the clinically important rhinovirus C species (RV-C). The backbone of C2 2Apro superimposed closely (1.41-1.81 A rmsd) with those of orthologs from RV-A2, coxsackie B4 (CB4), and enterovirus 71 (EV71) having sequence identities between 40% and 60%. Comparison of the structures suggest that the differential functional properties of C2 2Apro stem from its unique surface charge, high proportion of surface aromatics, and sequence surrounding the di-tyrosine flap.