Title Identification of Recombinant Human Rhinovirus A and C in Circulating Strains from Upper and Lower Respiratory Infections.
Author Kim, Hak; Kim, Kisoon; Kim, Dae-Won; Jung, Hee-Dong; Min Cheong, Hyang; Kim, Ki Hwan; Soo Kim, Dong; Kim, You-Jin
Journal PLoS One Publication Year/Month 2013
PMID 23826363 PMCID PMC3695095
Affiliation 1.Division of Respiratory Viruses, Center for Infectious Diseases, Korea National Institute of Health, Korea Centers for Disease Control and Prevention, Cheongwon-gun, Chungbuk, Republic of Korea.

Human rhinoviruses (HRVs), in the Enterovirus genus within the family Picornaviridae, are a highly prevalent cause of acute respiratory infection (ARI). Enteroviruses are genetically highly variable, and recombination between serotypes is known to be a major contribution to their diversity. Recently it was reported that recombination events in HRVs cause the diversity of HRV-C. This study analyzed parts of the viral genes spanning the 5\' non- coding region (NCR) through to the viral protein (VP) encoding sequences of 105 HRV field isolates from 51 outpatient cases of Acute Respiratory Infectious Network (ARINET) and 54 inpatient cases of severe lower respiratory infection (SLRI) surveillance, in order to identify recombination in field samples. When analyzing parts of the 5\'NCR and VP4/VP2 encoding sequences, we found intra- and interspecies recombinants in field strains of HRV-A and -C. Nineteen cases of recombination events (18.1%) were found among 105 field strains. For HRV-A, there were five cases (4.8%) of intraspecies recombination events and three cases (2.8%) of interspecies recombination events. For HRV-C, there were four cases (3.8%) of intraspecies recombination events and seven cases (6.7%) of interspecies recombination events. Recombination events were significantly more frequently observed in the ARINET samples (18 cases) than in the SLRI samples (1 case; P< 0.0001). The recombination breakpoints were located in nucleotides (nt) 472-554, which comprise stem-loop 5 in the internal ribosomal entry site (IRES), based on the HRV-B 35 sequence (accession no. FJ445187). Our findings regarding genomic recombination in circulating HRV-A and -C strains suggest that recombination might play a role in HRV fitness and could be a possible determinant of disease severity caused by various HRV infections in patients with ARI.

StrainID RV Species Serotype Length(nt) Country Year Strain Name
UNS03493 Unclassified None 863 South Korea 2008 KA08-3152
UNS03494 Unclassified None 837 South Korea 2008 KA08-3505
UNS03495 Unclassified None 865 South Korea 2008 KA08-3539
UNS03496 Unclassified None 830 South Korea 2008 KA08-4010
UNS03497 Unclassified None 862 South Korea 2008 KA08-4050
UNS03498 Unclassified None 866 South Korea 2008 KA08-4189
UNS03499 Unclassified None 864 South Korea 2008 KA08-4374
UNS03500 Unclassified None 841 South Korea 2008 KA08-4418
UNS03501 Unclassified None 828 South Korea 2008 KA08-4631
UNS03502 Unclassified None 853 South Korea 2009 KA09-101
UNS03503 Unclassified None 864 South Korea 2009 KA09-218
UNS03504 Unclassified None 876 South Korea 2009 KA09-446
UNS03505 Unclassified None 860 South Korea 2009 KA09-495
UNS03506 Unclassified None 862 South Korea 2009 KA09-560
UNS03507 Unclassified None 857 South Korea 2009 KA09-756
UNS03508 Unclassified None 862 South Korea 2009 KA09-806
UNS03509 Unclassified None 864 South Korea 2009 KA09-822
UNS03510 Unclassified None 874 South Korea 2009 KA09-864
UNS03511 Unclassified None 848 South Korea 2009 KA09-893
UNS03512 Unclassified None 860 South Korea 2009 KA09-917
UNS03513 Unclassified None 863 South Korea 2008 KL0809-47
UNS03514 Unclassified None 863 South Korea 2008 KL0809-49
UNS03515 Unclassified None 866 South Korea 2008 KL0809-74
UNS03516 Unclassified None 864 South Korea 2008 KL0809-101
UNS03517 Unclassified None 866 South Korea 2008 KL0809-165
UNS03518 Unclassified None 869 South Korea 2008 KL0809-181
UNS03519 Unclassified None 862 South Korea 2009 KL0809-202
UNS03520 Unclassified None 863 South Korea 2009 KL0809-236
UNS03521 Unclassified None 864 South Korea 2009 KL0809-307
UNS03522 Unclassified None 853 South Korea 2009 KL0809-374
  • Copyright © 2023
    National Institute of Pathogen Biology, CAMS & PUMC, Bejing, China
    All rights reserved.