Title | Human rhinoviruses including group C are common in stool samples of young Finnish children. | ||
Author | Honkanen, Hanna; Oikarinen, Sami; Peltonen, Pauliina; Simell, Olli; Ilonen, Jorma; Veijola, Riitta; Knip, Mikael; Hyoty, Heikki | ||
Journal | J Clin Virol | Publication Year/Month | 2013-Mar |
PMID | 23273491 | PMCID | -N/A- |
Affiliation | 1.University of Tampere, School of Medicine, Tampere, Finland. hanna.honkanen@uta.fi. |
BACKGROUND: Human rhinoviruses (HRVs) are common causes of viral respiratory infections. They have been widely studied in respiratory samples in hospital patient series but only a few studies have been performed to assess their occurrence in other sample types and their circulation in healthy children background population. OBJECTIVES: To analyze the frequency of HRVs in the background population in Finland by screening HRV RNA from stool samples longitudinally collected in a cohort of young children. STUDY DESIGN: Altogether 4184 stool samples were collected regularly from a cohort of children who were observed from birth. Samples were screened for the presence of RNA of HRVs using RT-PCR. HRV specific sequences were identified by sequencing the VP1 or VP4/VP2 coding region. Virus isolation was performed using four different cell lines and the result was confirmed by real time PCR. RESULTS: A total of 9% of the stool samples were positive for HRV RNA. Sequence analysis indicated that the most prevalent species was HRV-A, and the most prevalent serotype was HRV61. HRV-B and HRV-C species were also detected. One of the six tested rhinovirus positive samples retained its infectivity and was able to grow in RD and GMK cells. CONCLUSIONS: Our study shows that HRVs are frequently detected in the stool samples from the population of young children. We also show that HRV-C, which can cause severe illnesses in children, is commonly circulating in young children in Finland.