| Title | Phylogenetic patterns of human respiratory picornavirus species, including the newly identified group C rhinoviruses, during a 1-year surveillance of a hospitalized patient population in Italy. | ||
| Author | Piralla, Antonio; Baldanti, Fausto; Gerna, Giuseppe | ||
| Journal | J Clin Microbiol | Publication Year/Month | 2011-Jan |
| PMID | 21068279 | PMCID | PMC3020431 |
| Affiliation | 1.S.S. Virologia Molecolare, S.C. Virologia e Microbiologia, Fondazione IRCCS Policlinico San Matteo, 27100 Pavia, Italy. segreteria.virologia@smatteo.pv.it. | ||
Human rhinovirus species C (HRV-C) was the second most common HRV species detected in hospitalized patients in Italy with acute respiratory disease during a 1-year surveillance period. Sequencing of the picornavirus VP4/VP2 region allowed molecular typing of HRV-A and HRV-B and provisional typing of HRV-C.
| StrainID | RV Species | Serotype | Length(nt) | Country | Year | Strain Name |
|---|---|---|---|---|---|---|
| UNS02616 | Unclassified | None | 402 | Italy | 2009 | Pav126-8758 |
| UNS02617 | Unclassified | None | 402 | Italy | 2009 | Pav229-9029 |
| UNS02618 | Unclassified | None | 401 | Italy | 2008 | Pav169-26424 |
| UNS02619 | Unclassified | None | 402 | Italy | 2009 | Pav57-5799 |
| UNS02620 | Unclassified | None | 402 | Italy | 2009 | Pav216-5870 |
| UNS02621 | Unclassified | None | 402 | Italy | 2008 | Pav225-26484 |
| UNS02622 | Unclassified | None | 402 | Italy | 2009 | Pav240-17668 |
| UNS02623 | Unclassified | None | 366 | Italy | 2008 | Pav174-27767 |
| UNS02624 | Unclassified | None | 402 | Italy | 2008 | Pav87-24691 |
| UNS02625 | Unclassified | None | 402 | Italy | 2008 | Pav90-23647 |
| UNS02626 | Unclassified | None | 402 | Italy | 2008 | Pav93-24232 |
| UNS02627 | Unclassified | None | 402 | Italy | 2008 | Pav104-23061 |
| UNS02628 | Unclassified | None | 402 | Italy | 2009 | Pav45-3991 |
| UNS02629 | Unclassified | None | 402 | Italy | 2009 | Pav127-1256 |
| UNS02630 | Unclassified | None | 402 | Italy | 2008 | Pav29-30258 |
| UNS02631 | Unclassified | None | 402 | Italy | 2009 | Pav195-142 |
| UNS02632 | Unclassified | None | 402 | Italy | 2009 | Pav210-13878 |
| UNS02633 | Unclassified | None | 402 | Italy | 2008 | Pav165-25799 |
| UNS02634 | Unclassified | None | 402 | Italy | 2009 | Pav204-3913 |
| UNS02635 | Unclassified | None | 402 | Italy | 2008 | Pav88-23560 |
| UNS02636 | Unclassified | None | 393 | Italy | 2008 | Pav189-24127 |
| UNS02637 | Unclassified | None | 402 | Italy | 2008 | Pav165-23533 |
| UNS02638 | Unclassified | None | 402 | Italy | 2008 | Pav219-24385 |
| UNS02639 | Unclassified | None | 402 | Italy | 2009 | Pav182-12207 |
| UNS02640 | Unclassified | None | 402 | Italy | 2009 | Pav78-17597 |
| UNS02641 | Unclassified | None | 402 | Italy | 2009 | Pav141-17710 |
| UNS02642 | Unclassified | None | 402 | Italy | 2009 | Pav213-452 |
| UNS02643 | Unclassified | None | 402 | Italy | 2009 | Pav239-16666 |
| UNS02644 | Unclassified | None | 402 | Italy | 2009 | Pav68-10804A |
| UNS02645 | Unclassified | None | 402 | Italy | 2009 | Pav241-76 |
| UNS02646 | Unclassified | None | 402 | Italy | 2008 | Pav23-26967 |
| UNS02647 | Unclassified | None | 402 | Italy | 2009 | Pav138-836 |
| UNS02648 | Unclassified | None | 342 | Italy | 2008 | Pav94-24275 |
| UNS02649 | Unclassified | None | 402 | Italy | 2008 | Pav97-24021 |
| UNS02650 | Unclassified | None | 402 | Italy | 2009 | Pav127-9085 |
| UNS02651 | Unclassified | None | 402 | Italy | 2009 | Pav152-111 |
| UNS02652 | Unclassified | None | 402 | Italy | 2009 | Pav153-227 |
| UNS02653 | Unclassified | None | 402 | Italy | 2009 | Pav154-226 |
| UNS02654 | Unclassified | None | 402 | Italy | 2009 | Pav155-356 |
| UNS02655 | Unclassified | None | 402 | Italy | 2008 | Pav103-28315 |
| UNS02656 | Unclassified | None | 402 | Italy | 2009 | Pav135-14698 |
| UNS02657 | Unclassified | None | 402 | Italy | 2009 | Pav69-12668 |
| UNS02658 | Unclassified | None | 402 | Italy | 2008 | Pav26-28729 |
| UNS02659 | Unclassified | None | 402 | Italy | 2009 | Pav175-144 |
| UNS02660 | Unclassified | None | 402 | Italy | 2009 | Pav74-13857 |
| UNS02661 | Unclassified | None | 348 | Italy | 2009 | Pav183-14964 |
| UNS02662 | Unclassified | None | 402 | Italy | 2009 | Pav183-13066 |
| UNS02663 | Unclassified | None | 402 | Italy | 2009 | Pav129-13887 |
| UNS02664 | Unclassified | None | 402 | Italy | 2008 | Pav175-30579 |
| UNS02665 | Unclassified | None | 402 | Italy | 2009 | Pav181-9278 |
| UNS02666 | Unclassified | None | 402 | Italy | 2009 | Pav211-14166 |
| UNS02667 | Unclassified | None | 396 | Italy | 2008 | Pav171-26234 |
| UNS02668 | Unclassified | None | 402 | Italy | 2009 | Pav113-8725 |
| UNS02669 | Unclassified | None | 402 | Italy | 2009 | Pav136-15657 |
| UNS02670 | Unclassified | None | 348 | Italy | 2009 | Pav160-7656 |
| UNS02671 | Unclassified | None | 402 | Italy | 2009 | Pav242-471 |
| UNS02672 | Unclassified | None | 402 | Italy | 2009 | Pav231-10762 |
| UNS02673 | Unclassified | None | 402 | Italy | 2009 | Pav69-14239 |
| UNS02674 | Unclassified | None | 399 | Italy | 2008 | Pav193-24545 |
| UNS02675 | Unclassified | None | 402 | Italy | 2009 | Pav75-14238 |
| UNS02676 | Unclassified | None | 402 | Italy | 2009 | Pav184-15806 |
| UNS02677 | Unclassified | None | 402 | Italy | 2009 | Pav184-15831 |
| UNS02678 | Unclassified | None | 402 | Italy | 2009 | Pav143-636 |
| UNS02679 | Unclassified | None | 402 | Italy | 2009 | Pav144-929 |
| UNS02680 | Unclassified | None | 402 | Italy | 2009 | Pav126-446 |
| UNS02681 | Unclassified | None | 402 | Italy | 2008 | Pav150-29715 |
| UNS02682 | Unclassified | None | 402 | Italy | 2009 | Pav235-12073 |
| UNS02683 | Unclassified | None | 399 | Italy | 2009 | Pav36-2021 |
| UNS02684 | Unclassified | None | 402 | Italy | 2008 | Pav218-24002 |
| UNS02685 | Unclassified | None | 402 | Italy | 2008 | Pav221-25108 |
| UNS02686 | Unclassified | None | 402 | Italy | 2008 | Pav196-27219 |
| UNS02687 | Unclassified | None | 402 | Italy | 2008 | Pav112-29341 |
| UNS02688 | Unclassified | None | 401 | Italy | 2008 | Pav17-26069 |
| UNS02689 | Unclassified | None | 402 | Italy | 2008 | Pav2-23525 |
| UNS02690 | Unclassified | None | 390 | Italy | 2009 | Pav178-1211 |
| UNS02691 | Unclassified | None | 402 | Italy | 2008 | Pav187-24128 |
| UNS02692 | Unclassified | None | 402 | Italy | 2008 | Pav9-25071 |
| UNS02693 | Unclassified | None | 402 | Italy | 2008 | Pav90-24684 |
| UNS02694 | Unclassified | None | 402 | Italy | 2009 | Pav70-12676 |
| UNS02695 | Unclassified | None | 402 | Italy | 2008 | Pav106-27515 |
| UNS02696 | Unclassified | None | 402 | Italy | 2008 | Pav3-23635 |
| UNS02697 | Unclassified | None | 402 | Italy | 2008 | Pav89-23561 |
| UNS02698 | Unclassified | None | 402 | Italy | 2008 | Pav7-23641 |
| UNS02699 | Unclassified | None | 402 | Italy | 2008 | Pav168-25003 |
| UNS02700 | Unclassified | None | 402 | Italy | 2008 | Pav191-25159 |
| UNS02701 | Unclassified | None | 402 | Italy | 2008 | Pav167-24690 |
| UNS02702 | Unclassified | None | 402 | Italy | 2009 | Pav80-877 |
| UNS02703 | Unclassified | None | 402 | Italy | 2009 | Pav132-12528 |
| UNS02704 | Unclassified | None | 402 | Italy | 2009 | Pav237-13608 |
| UNS02705 | Unclassified | None | 360 | Italy | 2008 | Pav85-24789 |
| UNS02706 | Unclassified | None | 402 | Italy | 2008 | Pav86-23933 |
| UNS02707 | Unclassified | None | 402 | Italy | 2009 | Pav37-2025 |
| UNS02708 | Unclassified | None | 402 | Italy | 2009 | Pav62-7748 |
| UNS02709 | Unclassified | None | 402 | Italy | 2009 | Pav245-1242 |
| UNS02710 | Unclassified | None | 402 | Italy | 2009 | Pav200-7694 |
| UNS02711 | Unclassified | None | 402 | Italy | 2009 | Pav163-9909 |
| UNS02712 | Unclassified | None | 402 | Italy | 2009 | Pav219-15709 |
| UNS02713 | Unclassified | None | 351 | Italy | 2009 | Pav142-505 |
| UNS02714 | Unclassified | None | 402 | Italy | 2009 | Pav55-6868 |
| UNS02715 | Unclassified | None | 402 | Italy | 2009 | Pav146-1038 |
| UNS02716 | Unclassified | None | 402 | Italy | 2009 | Pav66-9212 |
| UNS02717 | Unclassified | None | 402 | Italy | 2009 | Pav207-9211 |
| UNS02718 | Unclassified | None | 402 | Italy | 2009 | Pav228-8706 |
| UNS02719 | Unclassified | None | 402 | Italy | 2009 | Pav162-16640 |
| UNS02720 | Unclassified | None | 390 | Italy | 2009 | Pav134-13426 |
| UNS02721 | Unclassified | None | 390 | Italy | 2009 | Pav238-13246 |
| UNS02722 | Unclassified | None | 402 | Italy | 2009 | Pav236-12854 |
| UNS02723 | Unclassified | None | 402 | Italy | 2009 | Pav42-3261 |
| UNS02724 | Unclassified | None | 402 | Italy | 2009 | Pav43-3262 |
| UNS02725 | Unclassified | None | 402 | Italy | 2009 | Pav129-10015 |
| UNS02726 | Unclassified | None | 396 | Italy | 2009 | Pav39-4543 |
| UNS02727 | Unclassified | None | 396 | Italy | 2009 | Pav67-10364 |
| UNS02728 | Unclassified | None | 396 | Italy | 2009 | Pav55-5383 |
| UNS02729 | Unclassified | None | 396 | Italy | 2009 | Pav76-15124 |
| UNS02730 | Unclassified | None | 396 | Italy | 2009 | Pav199-10973 |
| UNS02731 | Unclassified | None | 396 | Italy | 2008 | Pav6-23492 |
| UNS02732 | Unclassified | None | 396 | Italy | 2008 | Pav86-29175 |
| UNS02733 | Unclassified | None | 396 | Italy | 2008 | Pav5-23353 |
| UNS02734 | Unclassified | None | 396 | Italy | 2008 | Pav3-22839 |
| UNS02735 | Unclassified | None | 396 | Italy | 2008 | Pav173-27000 |
| UNS02736 | Unclassified | None | 396 | Italy | 2008 | Pav12-24389 |
| UNS02737 | Unclassified | None | 396 | Italy | 2008 | Pav216-23700 |
| UNS02738 | Unclassified | None | 396 | Italy | 2008 | Pav57-23701 |
| UNS02739 | Unclassified | None | 396 | Italy | 2008 | Pav148-24045 |
| UNS02740 | Unclassified | None | 396 | Italy | 2008 | Pav224-28053 |
| UNS02741 | Unclassified | None | 396 | Italy | 2008 | Pav22-27709 |
| UNS02742 | Unclassified | None | 393 | Italy | 2008 | Pav3-24281B |
| UNS02743 | Unclassified | None | 396 | Italy | 2008 | Pav16-26068 |
| UNS02744 | Unclassified | None | 378 | Italy | 2008 | Pav13-22602 |
| UNS02745 | Unclassified | None | 396 | Italy | 2008 | Pav8-25377 |
| UNS02746 | Unclassified | None | 396 | Italy | 2008 | Pav149-24592 |
| UNS02747 | Unclassified | None | 396 | Italy | 2008 | Pav95-24683 |
| UNS02748 | Unclassified | None | 396 | Italy | 2008 | Pav215-25547 |
| UNS02749 | Unclassified | None | 396 | Italy | 2008 | Pav84-24618 |
| UNS02750 | Unclassified | None | 396 | Italy | 2008 | Pav4-23354 |
| UNS02751 | Unclassified | None | 396 | Italy | 2008 | Pav91-23956 |
| UNS02752 | Unclassified | None | 396 | Italy | 2008 | Pav96-24853 |
| UNS02753 | Unclassified | None | 396 | Italy | 2008 | Pav98-24908 |
| UNS02754 | Unclassified | None | 396 | Italy | 2009 | Pav38-2512 |
| UNS02755 | Unclassified | None | 386 | Italy | 2009 | Pav32-22 |
| UNS02756 | Unclassified | None | 396 | Italy | 2008 | Pav31-30502 |
| UNS02757 | Unclassified | None | 396 | Italy | 2009 | Pav157-2722 |
| UNS02758 | Unclassified | None | 396 | Italy | 2009 | Pav161-7900 |
| UNS02759 | Unclassified | None | 396 | Italy | 2009 | Pav64-8203 |
| UNS02760 | Unclassified | None | 396 | Italy | 2008 | Pav15-26506 |
| UNS02761 | Unclassified | None | 396 | Italy | 2008 | Pav111-28896 |
| UNS02762 | Unclassified | None | 396 | Italy | 2008 | Pav172-26425 |
| UNS02763 | Unclassified | None | 396 | Italy | 2008 | Pav23-29439 |
| UNS02764 | Unclassified | None | 396 | Italy | 2008 | Pav27-28874 |
| UNS02765 | Unclassified | None | 396 | Italy | 2008 | Pav30-30500 |
| UNS02766 | Unclassified | None | 396 | Italy | 2009 | Pav185-16738 |
| UNS02767 | Unclassified | None | 396 | Italy | 2009 | Pav114-2010 |
| UNS02768 | Unclassified | None | 396 | Italy | 2009 | Pav33-1131 |
| UNS02769 | Unclassified | None | 396 | Italy | 2009 | Pav188-2483 |
| UNS02770 | Unclassified | None | 396 | Italy | 2008 | Pav101-25920 |
| UNS02771 | Unclassified | None | 396 | Italy | 2009 | Pav125-8252 |
| UNS02772 | Unclassified | None | 396 | Italy | 2009 | Pav51-4546 |
| UNS02773 | Unclassified | None | 396 | Italy | 2008 | Pav21-27514 |
| UNS02774 | Unclassified | None | 396 | Italy | 2008 | Pav25-28727 |
| UNS02775 | Unclassified | None | 396 | Italy | 2009 | Pav34-1132 |
| UNS02776 | Unclassified | None | 396 | Italy | 2009 | Pav35-1495 |
| UNS02777 | Unclassified | None | 396 | Italy | 2009 | Pav230-9580 |
| UNS02778 | Unclassified | None | 396 | Italy | 2009 | Pav133-13099 |
| UNS02779 | Unclassified | None | 396 | Italy | 2008 | Pav190-24548 |
| UNS02780 | Unclassified | None | 339 | Italy | 2009 | Pav243-524 |
| UNS02781 | Unclassified | None | 396 | Italy | 2008 | Pav1-25267 |
| UNS02782 | Unclassified | None | 396 | Italy | 2008 | Pav13-25672 |
| UNS02783 | Unclassified | None | 396 | Italy | 2009 | Pav145-930 |
| UNS02784 | Unclassified | None | 396 | Italy | 2009 | Pav140-17216 |
| UNS02785 | Unclassified | None | 396 | Italy | 2009 | Pav77-16404 |
| UNS02786 | Unclassified | None | 396 | Italy | 2009 | Pav81-1048 |
| UNS02787 | Unclassified | None | 396 | Italy | 2009 | Pav244-1214 |
| UNS02788 | Unclassified | None | 396 | Italy | 2009 | Pav2-1143 |
| UNS02789 | Unclassified | None | 396 | Italy | 2009 | Pav79-876 |
| UNS02790 | Unclassified | None | 396 | Italy | 2009 | Pav82-1257 |
| UNS02791 | Unclassified | None | 396 | Italy | 2009 | Pav123-17564 |
| UNS02792 | Unclassified | None | 396 | Italy | 2009 | Pav164-12524 |
| UNS02793 | Unclassified | None | 402 | Italy | 2008 | Pav194-25894 |
| UNS02794 | Unclassified | None | 402 | Italy | 2008 | Pav107-27823 |
| UNS02795 | Unclassified | None | 330 | Italy | 2008 | Pav104-27154 |
| UNS02796 | Unclassified | None | 402 | Italy | 2009 | Pav212-17885 |
| UNS02797 | Unclassified | None | 402 | Italy | 2009 | Pav246-1243 |
| UNS02798 | Unclassified | None | 402 | Italy | 2009 | Pav116-7645 |
| UNS02799 | Unclassified | None | 402 | Italy | 2009 | Pav44-3370 |
| UNS02800 | Unclassified | None | 402 | Italy | 2008 | Pav28-30262 |
| UNS02801 | Unclassified | None | 402 | Italy | 2008 | Pav151-29520 |
| UNS02802 | Unclassified | None | 402 | Italy | 2008 | Pav220-24904 |
| UNS02803 | Unclassified | None | 402 | Italy | 2008 | Pav137-15958 |
| UNS02804 | Unclassified | None | 402 | Italy | 2008 | Pav198-27720 |
| UNS02805 | Unclassified | None | 402 | Italy | 2008 | Pav217-23905 |
| UNS02806 | Unclassified | None | 402 | Italy | 2008 | Pav19-28433 |
| UNS02807 | Unclassified | None | 402 | Italy | 2008 | Pav97-26145 |
| UNS02808 | Unclassified | None | 402 | Italy | 2009 | Pav158-5755 |
| UNS02809 | Unclassified | None | 402 | Italy | 2008 | Pav197-27653 |
| UNS02810 | Unclassified | None | 402 | Italy | 2009 | Pav138-16168 |