Title | Clinical severity and molecular typing of human rhinovirus C strains during a fall outbreak affecting hospitalized patients. | ||
Author | Piralla, A; Rovida, F; Campanini, G; Rognoni, V; Marchi, A; Locatelli, F; Gerna, G | ||
Journal | J Clin Virol | Publication Year/Month | 2009-Aug |
PMID | 19473873 | PMCID | -N/A- |
Affiliation | 1.Servizio di Virologia, Fondazione IRCCS Policlinico San Matteo, 27100 Pavia, Italy. |
BACKGROUND: The circulation rate and the clinical severity of infections caused by members of the new human rhinovirus C (HRV-C) species remain to be defined. OBJECTIVES: To investigate the epidemiologic and clinical impact of HRV-C strains in a fall outbreak interesting hospitalized patients. STUDY DESIGN: HRV species (A-C) were determined by phylogenetic analysis following amplification of two genome regions (5\'NCR and VP4/VP2) by RT-PCR. HRV species were correlated with age, respiratory tract involvement, clinical symptoms, and HRV load in respiratory secretions. RESULTS: During the first week of the period October-November 2008, single HRV infections were associated with 95% of all respiratory syndromes affecting hospitalized patients. Then, HRV infections (single+coinfections) interested about 90% of positive samples until the end of October, when they declined in frequency until reaching about 30% at the end of November. Overall, 104 HRV strains were detected and, of these, 90 could be classified by phylogenetic analysis, as follows: 45 HRV-A, 12 HRV-B, 28 HRV-C, and 5 human enterovirus D strains. HRV-C identity was confirmed by detection of cis-acting replication elements (cre) in 23/23 strains. As for severity of respiratory syndromes, unlike HRV-A and HRV-B strains, HRV-C strains were responsible for a significantly higher rate (p<0.05) of lower respiratory tract infections in the pediatric as compared to adult patient population. CONCLUSIONS: HRV-C strains have been shown to circulate at a rate intermediate between HRV-A and HRV-B strains, showing a greater degree of clinical severity in the pediatric population.
StrainID | RV Species | Serotype | Length(nt) | Country | Year | Strain Name |
---|---|---|---|---|---|---|
UNS02295 | Unclassified | None | 387 | Italy | 2008 | PV59 |
UNS02296 | Unclassified | None | 387 | Italy | 2008 | PV103 |
UNS02297 | Unclassified | None | 387 | Italy | 2008 | PV15 |
UNS02298 | Unclassified | None | 387 | Italy | 2008 | PV94 |
UNS02299 | Unclassified | None | 387 | Italy | 2008 | PV90 |
UNS02300 | Unclassified | None | 387 | Italy | 2008 | PV5 |
UNS02301 | Unclassified | None | 387 | Italy | 2008 | PV1 |
UNS02302 | Unclassified | None | 387 | Italy | 2008 | PV7 |
UNS02303 | Unclassified | None | 387 | Italy | 2008 | PV28 |
UNS02304 | Unclassified | None | 387 | Italy | 2008 | PV19 |
UNS02305 | Unclassified | None | 387 | Italy | 2008 | PV10 |
UNS02306 | Unclassified | None | 387 | Italy | 2008 | PV4 |
UNS02307 | Unclassified | None | 387 | Italy | 2008 | PV40 |
UNS02308 | Unclassified | None | 387 | Italy | 2008 | PV45 |
UNS02309 | Unclassified | None | 387 | Italy | 2008 | PV60 |
UNS02310 | Unclassified | None | 387 | Italy | 2008 | PV13 |
UNS02311 | Unclassified | None | 387 | Italy | 2008 | PV33 |
UNS02312 | Unclassified | None | 387 | Italy | 2008 | PV44 |
UNS02313 | Unclassified | None | 387 | Italy | 2008 | PV89 |
UNS02314 | Unclassified | None | 387 | Italy | 2008 | PV16 |
UNS02315 | Unclassified | None | 387 | Italy | 2008 | PV68 |
UNS02316 | Unclassified | None | 387 | Italy | 2008 | PV54 |
UNS02317 | Unclassified | None | 387 | Italy | 2008 | PV49 |