| Title | Novel species of human rhinoviruses in acute otitis media. | ||
| Author | Savolainen-Kopra, Carita; Blomqvist, Soile; Kilpi, Terhi; Roivainen, Merja; Hovi, Tapani | ||
| Journal | Pediatr Infect Dis J | Publication Year/Month | 2009-Jan |
| PMID | 19057460 | PMCID | -N/A- |
| Affiliation | 1.From the *Enterovirus Laboratory, Department of Viral Diseases and Immunology, National Public Health Institute (KTL), Helsinki, Finland; and daggerDepartment of Vaccines, National Public Health Institute (KTL), Helsinki, Finland. | ||
We have studied human rhinovirus (HRV) recovered from nasopharyngeal aspirates and middle ear fluids collected during acute otitis media with RT-PCR sequencing followed by phylogenetic analysis. In addition to a great diversity of traditional HRV types we found genetic relatives of the novel HRV species, suggested HRV-C, in both sample types. Our results indicate the presence of HRV-C in the middle ear for the first time.
| StrainID | RV Species | Serotype | Length(nt) | Country | Year | Strain Name |
|---|---|---|---|---|---|---|
| ANC08119 | A | None | 420 | Finland | 1997 | PNC89606 |
| ANC08124 | A | None | 420 | Finland | 1996 | PNC87025 |
| ANC08129 | A | None | 420 | Finland | 1996 | PNC86518 |
| ANC08134 | A | None | 420 | Finland | 1996 | PNC41617 |
| ANC08139 | A | None | 420 | Finland | 1996 | PNC40457 |
| ANC08144 | A | None | 420 | Finland | 1998 | PNC91949 |
| ANC08149 | A | None | 420 | Finland | 1997 | PNC88169 |
| ANM08120 | A | None | 420 | Finland | 1997 | PNC87586 |
| ANM08125 | A | None | 420 | Finland | 1996 | PNC87002 |
| ANM08130 | A | None | 420 | Finland | 1998 | PNC45894 |
| ANM08135 | A | None | 420 | Finland | 1996 | PNC41598 |
| ANM08140 | A | None | 420 | Finland | 1996 | PNC40170 |
| ANM08145 | A | None | 420 | Finland | 1996 | PNC40076 |
| ANP08117 | A | None | 420 | Finland | 1998 | PNC92728 |
| ANP08122 | A | None | 420 | Finland | 1997 | PNC89129 |
| ANP08127 | A | None | 420 | Finland | 1996 | PNC86918 |
| ANP08132 | A | None | 420 | Finland | 1998 | PNC44521 |
| ANP08137 | A | None | 420 | Finland | 1996 | PNC41563 |
| ANP08142 | A | None | 420 | Finland | 1997 | PNC89158 |
| ANP08147 | A | None | 399 | Finland | 1998 | PNC97132 |
| ANS08118 | A | None | 420 | Finland | 1998 | PNC93446 |
| ANS08123 | A | None | 420 | Finland | 1996 | PNC89019 |
| ANS08128 | A | None | 420 | Finland | 1996 | PNC86553 |
| ANS08133 | A | None | 420 | Finland | 1997 | PNC43985 |
| ANS08138 | A | None | 420 | Finland | 1997 | PNC40809 |
| ANS08143 | A | None | 420 | Finland | 1997 | PNC44035 |
| ANS08148 | A | None | 420 | Finland | 1996 | PNC40012 |
| ANZ08121 | A | None | 420 | Finland | 1997 | PNC43288 |
| ANZ08126 | A | None | 420 | Finland | 1996 | PNC86928 |
| ANZ08131 | A | None | 420 | Finland | 1998 | PNC45601 |
| ANZ08136 | A | None | 420 | Finland | 1996 | PNC41576 |
| ANZ08141 | A | None | 420 | Finland | 1998 | PNC91447 |
| ANZ08146 | A | None | 420 | Finland | 1996 | PNC40033 |
| BNC01574 | B | None | 420 | Finland | 1997 | PNC42127 |
| BNS01573 | B | None | 420 | Finland | 1997 | PNC89962 |
| CNC05959 | C | None | 414 | Finland | 1997 | PNC90620 |
| CNC05964 | C | None | 414 | Finland | 1996 | PNC88334 |
| CNC05969 | C | None | 414 | Finland | 1996 | PNC86460 |
| CNC05974 | C | None | 398 | Finland | 1997 | PNC91159 |
| CNC05979 | C | None | 414 | Finland | 1996 | PNC41150 |
| CNC05984 | C | None | 414 | Finland | 1996 | PNC40168 |
| CNC05989 | C | None | 414 | Finland | 1997 | PNC41713 |
| CNM05960 | C | None | 414 | Finland | 1996 | PNC90314 |
| CNM05965 | C | None | 414 | Finland | 1997 | PNC87113 |
| CNM05970 | C | None | 414 | Finland | 1996 | PNC86327 |
| CNM05975 | C | None | 414 | Finland | 1997 | PNC43211 |
| CNM05980 | C | None | 414 | Finland | 1996 | PNC41066 |
| CNM05985 | C | None | 414 | Finland | 1996 | PNC40157 |
| CNM05990 | C | None | 414 | Finland | 1996 | PNC40135 |
| CNP05962 | C | None | 414 | Finland | 1997 | PNC88632 |
| CNP05967 | C | None | 414 | Finland | 1996 | PNC86842 |
| CNP05972 | C | None | 414 | Finland | 1998 | PNC44610 |
| CNP05977 | C | None | 414 | Finland | 1996 | PNC41830 |
| CNP05982 | C | None | 414 | Finland | 1996 | PNC40449 |
| CNP05987 | C | None | 414 | Finland | 1996 | PNC86718 |
| CNS05963 | C | None | 414 | Finland | 1998 | PNC88488 |
| CNS05968 | C | None | 414 | Finland | 1996 | PNC86675 |
| CNS05973 | C | None | 414 | Finland | 1997 | PNC44147 |
| CNS05978 | C | None | 414 | Finland | 1996 | PNC41788 |
| CNS05983 | C | None | 414 | Finland | 1996 | PNC40352 |
| CNS05988 | C | None | 387 | Finland | 1996 | PNC86491 |
| CNZ05961 | C | None | 414 | Finland | 1997 | PNC89098 |
| CNZ05966 | C | None | 300 | Finland | 1996 | PNC86975 |
| CNZ05971 | C | None | 414 | Finland | 1996 | PNC86275 |
| CNZ05976 | C | None | 414 | Finland | 1997 | PNC42613 |
| CNZ05981 | C | None | 414 | Finland | 1996 | PNC40991 |
| CNZ05986 | C | None | 414 | Finland | 1997 | PNC89239 |
| CNZ05991 | C | None | 414 | Finland | 1996 | PNC40044 |