Title Detection of rhinoviruses by tissue culture and two independent amplification techniques, nucleic acid sequence-based amplification and reverse transcription-PCR, in children with acute respiratory infections during a winter season.
Author Loens, K; Goossens, H; de Laat, C; Foolen, H; Oudshoorn, P; Pattyn, S; Sillekens, P; Ieven, M
Journal J Clin Microbiol Publication Year/Month 2006-Jan
PMID 16390965 PMCID PMC1351952
Affiliation 1.Department of Medical Microbiology, University of Antwerp, Wilrijk, Belgium. katherine.loens@ua.ac.be.

Five hundred seventeen consecutive nasopharyngeal aspirates were collected between October 1998 and May 1999 for episodes of acute respiratory tract infections in children presenting at the University Hospital of Antwerp. Culture and nucleic acid amplification techniques--nucleic acid sequence-based amplification (NASBA) and reverse transcription-PCR (RT-PCR)--were applied to detect rhinoviruses (RVs). Other respiratory viruses were detected by immunofluorescence (IF) analysis of the specimens and IF analysis of shell vial cultures. Among the 517 specimens, 219 viral agents were identified. They were, in decreasing order, rhinoviruses (93 [18.0%]), respiratory syncytial virus (76 [14.7%]), adenoviruses (16 [3.1%]), influenza viruses (15 [2.9%]), enteroviruses (15 [2.9%]), and herpes simplex virus (4 [0.8%]). For the evaluation of rhinovirus detection, culture positivity and/or a positive reaction in the two independent amplification methods was used as an expanded "gold standard." Based on this standard, the sensitivity, specificity, positive predictive value, and negative predictive value of culture were 44.7, 100, 100, and 99.8%, and those of NASBA and RT-PCR were 85.1, 98.3, 83.3, and 98.5% and 82.9, 93.4, 55.7, and 98.2%, respectively. NASBA and RT-PCR produced comparable results and were significantly more sensitive than virus culture. RVs showed the highest incidence in acute respiratory tract infections in children.

StrainID RV Species Serotype Length(nt) Country Year Strain Name
UNS00683 Unclassified None 341 Belgium 1998 98106375
UNS00684 Unclassified None 356 Belgium 1998 98108235
UNS00685 Unclassified None 350 Belgium 1998 98108245
UNS00686 Unclassified None 319 Belgium 1998 98128217
UNS00687 Unclassified None 350 Belgium 1998 99048153
UNS00688 Unclassified None 321 Belgium 1998 99038333
UNS00689 Unclassified None 351 Belgium 1998 99038325
UNS00690 Unclassified None 364 Belgium 1998 99038125
UNS00691 Unclassified None 351 Belgium 1998 98108354
UNS00692 Unclassified None 359 Belgium 1998 98108322
UNS00693 Unclassified None 348 Belgium 1998 98108309
UNS00694 Unclassified None 343 Belgium 1998 98108286
UNS00695 Unclassified None 352 Belgium 1998 98108259
UNS00696 Unclassified None 350 Belgium 1998 98108240
UNS00697 Unclassified None 351 Belgium 1998 99058271
UNS00698 Unclassified None 342 Belgium 1998 99058246
UNS00699 Unclassified None 357 Belgium 1998 99048272
UNS00700 Unclassified None 327 Belgium 1998 98118131
UNS00701 Unclassified None 345 Belgium 1998 99038597
UNS00702 Unclassified None 358 Belgium 1998 99038488
UNS00703 Unclassified None 363 Belgium 1998 99038493
UNS00704 Unclassified None 345 Belgium 1998 99028063
UNS00705 Unclassified None 347 Belgium 1998 99018486
UNS00706 Unclassified None 349 Belgium 1998 99018099
UNS00707 Unclassified None 340 Belgium 1998 99018276
UNS00708 Unclassified None 360 Belgium 1998 98128526
UNS00709 Unclassified None 344 Belgium 1998 98118163
UNS00710 Unclassified None 343 Belgium 1998 98108239
UNS00711 Unclassified None 340 Belgium 1998 99058240
UNS00712 Unclassified None 342 Belgium 1998 99048172
UNS00713 Unclassified None 344 Belgium 1998 99038420
UNS00714 Unclassified None 353 Belgium 1998 99038154
UNS00715 Unclassified None 347 Belgium 1998 98128507
UNS00716 Unclassified None 358 Belgium 1998 98118382
UNS00717 Unclassified None 355 Belgium 1998 98118226
UNS00718 Unclassified None 359 Belgium 1998 98108401
UNS00719 Unclassified None 358 Belgium 1998 99028345
UNS00720 Unclassified None 353 Belgium 1998 98128243
UNS00721 Unclassified None 339 Belgium 1998 98108369
UNS00722 Unclassified None 372 Belgium 1998 99028181
UNS00723 Unclassified None 352 Belgium 1998 99038140
UNS00724 Unclassified None 364 Belgium 1998 98128559
UNS00725 Unclassified None 364 Belgium 1998 99018430
UNS00726 Unclassified None 364 Belgium 1998 98118250
UNS00727 Unclassified None 363 Belgium 1998 99048461
UNS00728 Unclassified None 364 Belgium 1998 99058425
UNS00729 Unclassified None 339 Belgium 1998 99028352
UNS00730 Unclassified None 341 Belgium 1998 98118320
UNS00731 Unclassified None 357 Belgium 1998 99058361
UNS00732 Unclassified None 345 Belgium 1998 98118159
UNS00733 Unclassified None 352 Belgium 1998 98118173
UNS00734 Unclassified None 346 Belgium 1998 99038329
UNS00735 Unclassified None 346 Belgium 1998 98108258
UNS00736 Unclassified None 364 Belgium 1998 98108080
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